PGSC0003DMG400020934 (Solanum tuberosum)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 PGSC0003DMG400020934 T321419_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400053952 S1FA 4 67
PGSC0003DMT400053953 S1FA 4 69

Links

Other S1FA family TFs
Other Solanum tuberosum TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
S1FA3 Arabidopsis thaliana AT3G09735 D 0.742
PK08477.1 Cannabis sativa PK08477.1 I 0.773
mgf004062m Mimulus guttatus mgf004062m I 0.864
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.773
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.758
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.712
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.742
mgf000337m Mimulus guttatus mgf000337m I 0.894
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.788
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.818
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.879
29805.m001471 Ricinus communis 29805.m001471 I 0.894
Cla018556 Citrullus lanatus Cla018556 I 0.803
Cla018106 Citrullus lanatus Cla018106 I 0.803
Ca_12028 Cicer arietinum Ca_12028 I 0.818
Ca_12027 Cicer arietinum Ca_12027 I 0.818
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.742
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.712
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.742
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.758
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.712
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.894
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.879
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.848
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.818
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.833
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.833
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.864
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.788
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.818
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.879
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.788
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.848
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.758
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.742
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.803
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.894
S1FA1 Arabidopsis thaliana AT3G53370 I 0.727
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.758
Bo00703s130 Brassica oleracea Bo00703s130 I 0.712
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.818
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.818
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.864
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.719
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.727
Bra039779 Brassica rapa Bra039779 I 0.727
Bra034084 Brassica rapa Bra034084 I 0.727
Bra029784 Brassica rapa Bra029784 I 0.742
Bo00703s150 Brassica oleracea Bo00703s150 I 0.712
Bo5g138130 Brassica oleracea Bo5g138130 I 0.727
S1FA2 Arabidopsis thaliana AT2G37120 I 0.742
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.712
TCM_022113 Theobroma cacao TCM_022113 I 0.788
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.879
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.758
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.848
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.833
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.894
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.985
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.727
OPUNC04G09650 Oryza punctata OPUNC04G09650 I 0.732
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.848
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.818
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.848
Bo3g061880 Brassica oleracea Bo3g061880 I 0.712
MDP0000276000 Malus domestica MDP0000276000 N 0.727
MDP0000559232 Malus domestica MDP0000559232 N 0.786
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.788
Pm002519 Prunus mume Pm002519 N 0.742
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.714
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.727
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.758
TRIUR3_32840 Triticum urartu TRIUR3_32840 N 0.743
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.742