Ciclev10013218m.g (Citrus clementina)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04689 (S1FA) IPR006779 Ciclev10013218m.g T321493_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
S1FA3
M07252_2.00
Arabidopsis thaliana
RGAASNTTCTAGAAN

NTTCTAGAANSTTCY
Dap-seq
OMalley et al.(2016)
AT3G09735_col_a
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10013218m S1FA 24 89

Links

Other S1FA family TFs
Other Citrus clementina TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
S1FA3 Arabidopsis thaliana AT3G09735 D 0.758
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.909
Cla018556 Citrullus lanatus Cla018556 I 0.894
29805.m001471 Ricinus communis 29805.m001471 I 0.848
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.848
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.879
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.848
mgf000337m Mimulus guttatus mgf000337m I 0.864
mgf004062m Mimulus guttatus mgf004062m I 0.803
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.818
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.742
Cla018106 Citrullus lanatus Cla018106 I 0.848
Ca_12028 Cicer arietinum Ca_12028 I 0.848
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.848
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.833
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.864
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.848
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.773
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.894
TCM_022113 Theobroma cacao TCM_022113 I 0.864
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.894
Ca_12027 Cicer arietinum Ca_12027 I 0.864
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.727
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.758
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.864
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.864
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 1.000
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.879
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.864
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.773
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.788
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.758
PK08477.1 Cannabis sativa PK08477.1 I 0.833
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.864
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.833
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.758
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.758
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.758
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.758
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.758
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.758
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.833
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.879
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.848
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.818
S1FA2 Arabidopsis thaliana AT2G37120 I 0.727
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.909
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.833
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.894
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.833
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.879
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.758
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.833
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.833
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.864
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.712
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.788
Bra034084 Brassica rapa Bra034084 I 0.727
S1FA1 Arabidopsis thaliana AT3G53370 I 0.788
Bo00703s130 Brassica oleracea Bo00703s130 I 0.727
Bo00703s150 Brassica oleracea Bo00703s150 I 0.727
Bo1g144300 Brassica oleracea Bo1g144300 I 0.727
Bo3g061880 Brassica oleracea Bo3g061880 I 0.712
Bo5g138130 Brassica oleracea Bo5g138130 I 0.742
Bo6g067310 Brassica oleracea Bo6g067310 I 0.742
Bra003132 Brassica rapa Bra003132 I 0.742
Bra029784 Brassica rapa Bra029784 I 0.758
OB04G18770 Oryza brachyantha OB04G18770 I 0.742
OB04G18780 Oryza brachyantha OB04G18780 I 0.758
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.758
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.848
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.742
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.742
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.833
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.727
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.727
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.742
OS04G0408900 Oryza sativa OS04G0408900 N 0.742
S1FA2 Oryza sativa OS04G0408700 N 0.727
MDP0000276000 Malus domestica MDP0000276000 N 0.788
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.742
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.742
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.742
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.727
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.742
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.727
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.742
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.742
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.818
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.712
OBART04G11650 Oryza barthii OBART04G11650 N 0.727
Pm002519 Prunus mume Pm002519 N 0.818
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.742
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.742
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.742
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.727
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.742
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.742
OBART04G11660 Oryza barthii OBART04G11660 N 0.742
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.727
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.712
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.727
Si011030m.g Setaria italica Si011030m.g N 0.742
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.818
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.742
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.727
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.742