GMEB2 (Canis familiaris)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSCAFG00000013008 T321633_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN

NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.994 1.000
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM

KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.994 1.000
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW

WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.994 1.000
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA

TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.994 1.000
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM

KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.994 1.000
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV

BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.994 1.000
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV

BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.994 1.000
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN

NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.992 0.947
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH

DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.992 0.933
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN

NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.986 0.747
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN

NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.986 0.747
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN

NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.986 0.733
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN

NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.986 0.733
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN

NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.986 0.733
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM

KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.986 0.733
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN

NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.986 0.733
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY

RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.981 0.707
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN

NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.981 0.693
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN

NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.956 0.627
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000019166 SAND 87 162

Links

Other SAND family TFs
Other Canis familiaris TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA010469 Oryza indica BGIOSGA010469 N 0.000
BGIOSGA010470 Oryza indica BGIOSGA010470 N 0.000
BGIOSGA033524 Oryza indica BGIOSGA033524 I 0.000
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N 0.000
F775_12743 Aegilops tauschii F775_12743 N 0.000
GRMZM5G883760 Zea mays GRMZM5G883760 N 0.000
GSMUA_Achr10G31400_001 Musa acuminata GSMUA_Achr10G31400_001 N 0.000
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I 0.000
LPERR03G19190 Leersia perrieri LPERR03G19190 N 0.000
OB03G31790 Oryza brachyantha OB03G31790 N 0.000
OB11G27860 Oryza brachyantha OB11G27860 I 0.000
OBART03G22560 Oryza barthii OBART03G22560 N 0.000
OBART11G23480 Oryza barthii OBART11G23480 I 0.000
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N 0.000
OPUNC03G21190 Oryza punctata OPUNC03G21190 N 0.000
OPUNC11G19830 Oryza punctata OPUNC11G19830 I 0.000
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N 0.000
ORGLA11G0188100 Oryza glaberrima ORGLA11G0188100 I 0.000
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N 0.000
ORUFI11G25330 Oryza rufipogon ORUFI11G25330 I 0.000
OS03G0437100 Oryza sativa OS03G0437100 N 0.000
OS11G0340477 Oryza sativa OS11G0340477 N 0.000
OS11G0702400 Oryza sativa OS11G0702400 I 0.000
PDK_20s1446781g002 Phoenix dactylifera PDK_20s1446781g002 N 0.000
SapurV1A.0008s0970 Salix purpurea SapurV1A.0008s0970 I 0.000
Sb01g031920 Sorghum bicolor Sb01g031920 N 0.000
Si037516m.g Setaria italica Si037516m.g N 0.000
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N 0.000
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N 0.000