samd11 (Danio rerio)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSDARG00000077852 T321665_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q4RVQ8_TETNG
M02466_2.00 		Tetraodon nigroviridis
NNNNDCGRNN
NNYCGHNNNN		 PBM
Weirauch et al.(2014)
pTH6271 		0.993 0.974
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000112558 SAND 90 165
ENSDARP00000118743 SAND 90 163

Links

Other SAND family TFs
Other Danio rerio TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSLOCG00000007210 Lepisosteus oculatus ENSLOCG00000007210 I 0.993
ENSLACG00000017131 Latimeria chalumnae ENSLACG00000017131 I 0.993
Q4RVQ8_TETNG Tetraodon nigroviridis Q4RVQ8_TETNG D 0.993
ENSAMXG00000012918 Astyanax mexicanus ENSAMXG00000012918 I 0.993
XP_002936428 Xenopus tropicalis XP_002936428 I 0.992
fgenesh2_pg.scaffold_489000019 Branchiostoma floridae fgenesh2_pg.scaffold_489000019 I 0.989
ENSMODG00000029151 Monodelphis domestica ENSMODG00000029151 I 0.989
SAMD11 Canis familiaris ENSCAFG00000019373 I 0.988
Myotis_brandtii_SAMD11_10009655 Myotis brandtii Myotis_brandtii_SAMD11_10009655 I 0.988
ENSOARG00000008099 Ovis aries ENSOARG00000008099 I 0.988
SAMD11 Dasypus novemcinctus ENSDNOG00000041400 I 0.988
BGLB005418 Biomphalaria glabrata BGLB005418 I 0.960
Alligator_sinensis_CCG015369.1 Alligator sinensis Alligator_sinensis_CCG015369.1 I 0.959
ISCW014501 Ixodes scapularis ISCW014501 I 0.935
SMAR002818 Strigamia maritima SMAR002818 I 0.926
SMAR002327 Strigamia maritima SMAR002327 I 0.887
SPU_022540 Strongylocentrotus purpuratus SPU_022540 I 0.885
LotgiG229327 Lottia gigantea LotgiG229327 I 0.865
HelroG194341 Helobdella robusta HelroG194341 I 0.844