GMEB2 (Equus caballus)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSECAG00000019377 T321689_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN

NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.994 1.000
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM

KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.994 1.000
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW

WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.994 1.000
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA

TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.994 1.000
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM

KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.994 1.000
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV

BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.994 1.000
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV

BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.994 1.000
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN

NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.992 0.947
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH

DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.992 0.933
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN

NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.986 0.747
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN

NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.986 0.747
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN

NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.986 0.733
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN

NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.986 0.733
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN

NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.986 0.733
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM

KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.986 0.733
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN

NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.986 0.733
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY

RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.981 0.707
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN

NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.981 0.693
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN

NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.956 0.627
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000016945 SAND 87 162

Links

Other SAND family TFs
Other Equus caballus TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si010504m.g Setaria italica Si010504m.g I 0.000
MLOC_53086 Hordeum vulgare MLOC_53086 I 0.000
TRIUR3_08851 Triticum urartu TRIUR3_08851 I 0.000
OB04G27030 Oryza brachyantha OB04G27030 I 0.000
Traes_7DS_7F0AF83B0 Triticum aestivum Traes_7DS_7F0AF83B0 I 0.000
OBART04G20020 Oryza barthii OBART04G20020 I 0.000
OGLUM04G19900 Oryza glumaepatula OGLUM04G19900 I 0.000
Traes_7AS_6398221B7 Triticum aestivum Traes_7AS_6398221B7 I 0.000
OMERI03G30800 Oryza meridionalis OMERI03G30800 I 0.000
ONIVA04G18230 Oryza nivara ONIVA04G18230 I 0.000
OPUNC04G17680 Oryza punctata OPUNC04G17680 I 0.000
ORGLA04G0171200 Oryza glaberrima ORGLA04G0171200 I 0.000
OS04G0536500 Oryza sativa OS04G0536500 I 0.000
Sb10g000460 Sorghum bicolor Sb10g000460 I 0.000
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I 0.000
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I 0.000
Si006829m.g Setaria italica Si006829m.g I 0.000
Traes_4AL_F853C8660 Triticum aestivum Traes_4AL_F853C8660 I 0.000
LPERR04G16200 Leersia perrieri LPERR04G16200 I 0.000
Pavir.Da02426 Panicum virgatum Pavir.Da02426 I 0.000
F775_07224 Aegilops tauschii F775_07224 I 0.000
Si022723m.g Setaria italica Si022723m.g I 0.000
Pavir.J07126 Panicum virgatum Pavir.J07126 I 0.000
BRADI1G52187 Brachypodium distachyon BRADI1G52187 I 0.000
Pavir.J26987 Panicum virgatum Pavir.J26987 I 0.000
BGIOSGA014649 Oryza indica BGIOSGA014649 I 0.000
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I 0.000
ORUFI04G21580 Oryza rufipogon ORUFI04G21580 I 0.000
GRMZM2G178998 Zea mays GRMZM2G178998 I 0.000
GRMZM2G041668 Zea mays GRMZM2G041668 I 0.000
GRMZM2G440219 Zea mays GRMZM2G440219 I 0.000
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.000
Traes_2AL_8EE7F34F6 Triticum aestivum Traes_2AL_8EE7F34F6 N 0.000
Pavir.J31179 Panicum virgatum Pavir.J31179 N 0.000
Pavir.J20890 Panicum virgatum Pavir.J20890 N 0.000
TRIUR3_06372 Triticum urartu TRIUR3_06372 N 0.000
TRIUR3_24878 Triticum urartu TRIUR3_24878 N 0.000
TRIUR3_10969 Triticum urartu TRIUR3_10969 N 0.000
Traes_2AL_C0670BBDD Triticum aestivum Traes_2AL_C0670BBDD N 0.000
e_gw1.70.85.1 Physcomitrella patens e_gw1.70.85.1 N 0.000
Traes_2AL_CB84F42D2 Triticum aestivum Traes_2AL_CB84F42D2 N 0.000
Traes_2AL_F001B4F26 Triticum aestivum Traes_2AL_F001B4F26 N 0.000
Traes_2BL_CBFB7D720 Triticum aestivum Traes_2BL_CBFB7D720 N 0.000
TRIUR3_24879 Triticum urartu TRIUR3_24879 N 0.000
Traes_2DL_607AD3522 Triticum aestivum Traes_2DL_607AD3522 N 0.000
Traes_7DL_DF64397D7 Triticum aestivum Traes_7DL_DF64397D7 N 0.000
TRIUR3_10971 Triticum urartu TRIUR3_10971 N 0.000
Traes_2AL_61C5A2D03 Triticum aestivum Traes_2AL_61C5A2D03 N 0.000
Si014149m.g Setaria italica Si014149m.g N 0.000
MLOC_19933 Hordeum vulgare MLOC_19933 N 0.000
LPERR08G00380 Leersia perrieri LPERR08G00380 N 0.000
GSMUA_Achr3G22360_001 Musa acuminata GSMUA_Achr3G22360_001 N 0.000
GRMZM2G048826 Zea mays GRMZM2G048826 N 0.000
F775_52611 Aegilops tauschii F775_52611 N 0.000
F775_12735 Aegilops tauschii F775_12735 N 0.000
F775_00942 Aegilops tauschii F775_00942 N 0.000
BRADI5G27467 Brachypodium distachyon BRADI5G27467 N 0.000
BRADI3G13117 Brachypodium distachyon BRADI3G13117 N 0.000
BGIOSGA027807 Oryza indica BGIOSGA027807 N 0.000
MLOC_66083 Hordeum vulgare MLOC_66083 N 0.000
MLOC_67250 Hordeum vulgare MLOC_67250 N 0.000
OB08G10370 Oryza brachyantha OB08G10370 N 0.000
Sb07g000470 Sorghum bicolor Sb07g000470 N 0.000
Sb06g034010 Sorghum bicolor Sb06g034010 N 0.000
OS08G0103900 Oryza sativa OS08G0103900 N 0.000
ORUFI08G00330 Oryza rufipogon ORUFI08G00330 N 0.000
F775_16517 Aegilops tauschii F775_16517 N 0.000
OPUNC08G00360 Oryza punctata OPUNC08G00360 N 0.000
ONIVA08G00280 Oryza nivara ONIVA08G00280 N 0.000
OMERI08G00600 Oryza meridionalis OMERI08G00600 N 0.000
OGLUM08G00350 Oryza glumaepatula OGLUM08G00350 N 0.000
OBART08G00290 Oryza barthii OBART08G00290 N 0.000
AC212859.3_FG008 Zea mays AC212859.3_FG008 N 0.000