Aan_R005833 (Calypte anna)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 Aan_R005833 T322116_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN

NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.994 0.987
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN

NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.994 0.987
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN

NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.994 0.987
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM

KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.994 0.987
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN

NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.994 0.987
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN

NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.994 0.973
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN

NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.994 0.973
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN

NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.992 0.947
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY

RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.992 0.933
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH

DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.988 0.760
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN

NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.988 0.760
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN

NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.986 0.733
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM

KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.986 0.733
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW

WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.986 0.733
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA

TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.986 0.733
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM

KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.986 0.733
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV

BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.986 0.733
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV

BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.986 0.733
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN

NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.962 0.640
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aan_R005833 SAND 80 155

Links

Other SAND family TFs
Other Calypte anna TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sakowv30037050m.g Saccoglossus kowalevskii Sakowv30037050m.g I 0.000
Sakowv30037045m.g Saccoglossus kowalevskii Sakowv30037045m.g I 0.000
Sakowv30037039m.g Saccoglossus kowalevskii Sakowv30037039m.g I 0.000
Sakowv30037015m.g Saccoglossus kowalevskii Sakowv30037015m.g I 0.000
Sakowv30037007m.g Saccoglossus kowalevskii Sakowv30037007m.g I 0.000
Sakowv30037004m.g Saccoglossus kowalevskii Sakowv30037004m.g I 0.000
Sakowv30037001m.g Saccoglossus kowalevskii Sakowv30037001m.g N 0.000
Sakowv30036998m.g Saccoglossus kowalevskii Sakowv30036998m.g N 0.000
Sakowv30037036m.g Saccoglossus kowalevskii Sakowv30037036m.g N 0.000
Sakowv30036996m.g Saccoglossus kowalevskii Sakowv30036996m.g N 0.000
Sakowv30037041m.g Saccoglossus kowalevskii Sakowv30037041m.g N 0.000
Sakowv30037043m.g Saccoglossus kowalevskii Sakowv30037043m.g N 0.000
Sakowv30034964m.g Saccoglossus kowalevskii Sakowv30034964m.g N 0.000
Sakowv30034958m.g Saccoglossus kowalevskii Sakowv30034958m.g N 0.000