CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Db00082
(
Panicum virgatum
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01342 (SAND)
IPR000770
Pavir.Db00082
T322265_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Db00082.1.p
SAND
250
290
VLRGVVKRAGILCACSSCKGRKVVSPYYFEVHAGSTKKHPS
Pavir.Db00082.1.p
SAND
428
484
KRLLDGYIKELGIYCHCCNTVVSPSQFEAHAGRAARRKPYHNIYMSNGVSLHELSIS
Links
Other
SAND
family TFs
Other
Panicum virgatum
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G387485
Zea mays
GRMZM2G387485
N
0.985
Si005834m.g
Setaria italica
Si005834m.g
N
0.984
Pavir.J04848
Panicum virgatum
Pavir.J04848
N
0.978
ONIVA06G31450
Oryza nivara
ONIVA06G31450
N
0.971
ORGLA06G0289000
Oryza glaberrima
ORGLA06G0289000
N
0.971
OLONG_013922
Oryza longistaminata
OLONG_013922
N
0.971
OB06G36080
Oryza brachyantha
OB06G36080
N
0.971
OGLUM06G29720
Oryza glumaepatula
OGLUM06G29720
N
0.971
OBART06G28330
Oryza barthii
OBART06G28330
N
0.971
Traes_7AL_153E1A74A
Triticum aestivum
Traes_7AL_153E1A74A
N
0.961
LPERR06G23780
Leersia perrieri
LPERR06G23780
N
0.897
ORUFI06G30250
Oryza rufipogon
ORUFI06G30250
N
0.895