gmeb1.S (Xenopus laevis)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 XB-GENE-1002174 T322289_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gmeb1.S
M02469_2.00		 Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.994 0.987
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.991 0.933
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.991 0.920
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.991 0.920
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.991 0.920
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.991 0.920
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.991 0.920
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.991 0.907
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.984 0.747
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.983 0.733
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.981 0.707
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.981 0.707
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.981 0.707
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.981 0.707
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.981 0.707
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.981 0.707
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.981 0.707
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.960 0.640
For this family, TFs with SR scores > 0.843 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02469_2.00 SAND 57 132

DNA Binding Domains

Protein ID Domain From To Sequence
AAH72195 SAND 79 154

Links

Other SAND family TFs
Other Xenopus laevis TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gmeb1 Xenopus tropicalis XB-GENE-1002169 D 0.994
Aan_R005833 Calypte anna Aan_R005833 I 0.992
ENSPSIG00000016715 Pelodiscus sinensis ENSPSIG00000016715 I 0.992
ENSACAG00000010878 Anolis carolinensis ENSACAG00000010878 I 0.991
GMEB1 Ornithorhynchus anatinus ENSOANG00000006127 I 0.991
GMEB1 Oryctolagus cuniculus ENSOCUG00000010893 I 0.991
ENSPPYG00000001635 Pongo abelii ENSPPYG00000001635 I 0.991
GMEB1 Pan troglodytes ENSPTRG00000000438 I 0.991
ENSNLEG00000009837 Nomascus leucogenys ENSNLEG00000009837 I 0.991
ENSPANG00000018743 Papio anubis ENSPANG00000018743 I 0.991
Gmeb1 Mus musculus ENSMUSG00000028901 D 0.991
ENSMEUG00000004906 Macropus eugenii ENSMEUG00000004906 I 0.991
GMEB1 Loxodonta africana ENSLAFG00000011849 I 0.991
GMEB1 Gorilla gorilla ENSGGOG00000009221 I 0.991
GMEB1 Meleagris gallopavo ENSMGAG00000001716 D 0.991
GMEB1 Myotis lucifugus ENSMLUG00000012602 I 0.991
ENSMPUG00000015503 Mustela putorius furo ENSMPUG00000015503 I 0.991
ENSMODG00000010947 Monodelphis domestica ENSMODG00000010947 D 0.991
GMEB1 Pteropus vampyrus ENSPVAG00000017223 D 0.991
GMEB1 Sorex araneus ENSSARG00000001145 I 0.991
ENSP00000381890 Macaca fascicularis ENSP00000381890 I 0.991
ENSP00000294409-D1 Bos grunniens ENSP00000294409-D1 I 0.991
Cmyd_10009780 Chelonia mydas Cmyd_10009780 I 0.991
Gfo_R008934 Geospiza fortis Gfo_R008934 I 0.991
Myotis_brandtii_GMEB1_10029602 Myotis brandtii Myotis_brandtii_GMEB1_10029602 I 0.991
Pvit_15570 Pogona vitticeps Pvit_15570 I 0.991
Ogr01986 Ophisaurus gracilis Ogr01986 I 0.991
Brh_R012802 Buceros rhinoceros Brh_R012802 I 0.991
Alligator_sinensis_CCG020726.1 Alligator sinensis Alligator_sinensis_CCG020726.1 I 0.991
ENSSHAG00000009099 Sarcophilus harrisii ENSSHAG00000009099 I 0.991
ENSGALG00000000981 Gallus gallus ENSGALG00000000981 I 0.991
GMEB1 Taeniopygia guttata ENSTGUG00000000731 I 0.991
GMEB1 Tursiops truncatus ENSTTRG00000013602 I 0.991
Afo_R008896 Aptenodytes forsteri Afo_R008896 I 0.991
GMEB1 Vicugna pacos ENSVPAG00000006781 I 0.991
Gmeb1 Rattus norvegicus ENSRNOG00000010910 I 0.991
ENSOARG00000002809 Ovis aries ENSOARG00000002809 I 0.991
ENSFALG00000001378 Ficedula albicollis ENSFALG00000001378 I 0.991
GMEB1 Felis catus ENSFCAG00000018209 I 0.991
GMEB1 Canis familiaris ENSCAFG00000011711 I 0.991
GMEB1 Equus caballus ENSECAG00000009764 I 0.991
ENSCPOG00000013402 Cavia porcellus ENSCPOG00000013402 I 0.991
ENSAMEG00000011405 Ailuropoda melanoleuca ENSAMEG00000011405 I 0.991
GMEB1 Dasypus novemcinctus ENSDNOG00000025258 I 0.991
ENSCSAG00000001017 Chlorocebus sabaeus ENSCSAG00000001017 I 0.991
GMEB1 Homo sapiens ENSG00000162419 D 0.991
GMEB1 Callithrix jacchus ENSCJAG00000009754 I 0.991
ENSAPLG00000002955 Anas platyrhynchos ENSAPLG00000002955 I 0.991
GMEB1 Bos taurus ENSBTAG00000001160 I 0.991
ENSLACG00000011757 Latimeria chalumnae ENSLACG00000011757 I 0.990
ENSAPLG00000010816 Anas platyrhynchos ENSAPLG00000010816 I 0.986
ENSAMXG00000001001 Astyanax mexicanus ENSAMXG00000001001 I 0.986
ENSFALG00000005856 Ficedula albicollis ENSFALG00000005856 I 0.985
GMEB2 Taeniopygia guttata ENSTGUG00000006996 I 0.985
AAH84751 Xenopus laevis AAH84751 I 0.985
Tal_R007596 Tyto alba Tal_R007596 I 0.985
Gfo_R005287 Geospiza fortis Gfo_R005287 I 0.985
Brh_R002176 Buceros rhinoceros Brh_R002176 I 0.985
Aan_R015716 Calypte anna Aan_R015716 I 0.985
gmeb2.S Xenopus laevis XB-GENE-5755500 I 0.984
ENSGALG00000027470 Gallus gallus ENSGALG00000027470 I 0.984
Cmyd_10009585 Chelonia mydas Cmyd_10009585 I 0.984
Afo_R010444 Aptenodytes forsteri Afo_R010444 I 0.984
ENSLOCG00000001741 Lepisosteus oculatus ENSLOCG00000001741 I 0.984
ENSXMAG00000012852 Xiphophorus maculatus ENSXMAG00000012852 I 0.984
ENSPFOG00000017553 Poecilia formosa ENSPFOG00000017553 I 0.984
ENSPSIG00000013495 Pelodiscus sinensis ENSPSIG00000013495 I 0.984
ENSLOCG00000003512 Lepisosteus oculatus ENSLOCG00000003512 I 0.984
GMEB2 Meleagris gallopavo ENSMGAG00000006922 D 0.984
GMEB2 Danio rerio ENSDARG00000093240 I 0.983
ENSONIG00000017972 Oreochromis niloticus ENSONIG00000017972 I 0.983
Pvit_01323 Pogona vitticeps Pvit_01323 I 0.983
GMEB2 Anolis carolinensis ENSACAG00000011613 D 0.983
GMEB2 Monodelphis domestica ENSMODG00000016974 I 0.982
ENSSHAG00000018066 Sarcophilus harrisii ENSSHAG00000018066 I 0.982
ENSCSAG00000016428 Chlorocebus sabaeus ENSCSAG00000016428 I 0.981
Myotis_brandtii_GMEB2_10023457 Myotis brandtii Myotis_brandtii_GMEB2_10023457 I 0.981
GMEB2 Pan troglodytes ENSPTRG00000013744 I 0.981
GMEB2 Pteropus vampyrus ENSPVAG00000013473 I 0.981
si:ch73-302a13.2 Tetraodon nigroviridis ENSTNIG00000002528 I 0.981
GMEB2 Bos taurus ENSBTAG00000014769 I 0.981
GMEB2 Canis familiaris ENSCAFG00000013008 I 0.981
GMEB2 Callithrix jacchus ENSCJAG00000010283 I 0.981
ENSSTOG00000023031 Ictidomys tridecemlineatus ENSSTOG00000023031 I 0.981
GMEB2 Cavia porcellus ENSCPOG00000025567 I 0.981
Gmeb2 Rattus norvegicus ENSRNOG00000013339 I 0.981
ENSPANG00000024129 Papio anubis ENSPANG00000024129 I 0.981
Gmeb2 Mus musculus ENSMUSG00000038705 D 0.981
ENSNLEG00000010094 Nomascus leucogenys ENSNLEG00000010094 I 0.981
ENSMMUG00000006168 Macaca mulatta ENSMMUG00000006168 I 0.981
ENSPPYG00000011242 Pongo abelii ENSPPYG00000011242 I 0.981
GMEB2 Homo sapiens ENSG00000101216 D 0.981
GMEB2 Myotis lucifugus ENSMLUG00000014606 I 0.981
ENSMPUG00000008374 Mustela putorius furo ENSMPUG00000008374 I 0.981
GMEB2 Felis catus ENSFCAG00000031273 I 0.981
ENSOARG00000010596 Ovis aries ENSOARG00000010596 I 0.981
GMEB2 Equus caballus ENSECAG00000019377 I 0.981
GMEB2 Gorilla gorilla ENSGGOG00000008653 I 0.981
GMEB2 Dasypus novemcinctus ENSDNOG00000041843 I 0.981
ENSAMEG00000001647 Ailuropoda melanoleuca ENSAMEG00000001647 I 0.981
GMEB2 Otolemur garnettii ENSOGAG00000008826 I 0.981
ENSP00000266068-D1 Bos grunniens ENSP00000266068-D1 I 0.981
GMEB2 Oryctolagus cuniculus ENSOCUG00000025815 I 0.981
GMEB2 Ornithorhynchus anatinus ENSOANG00000004939 I 0.980
Alligator_sinensis_CCG018614.2 Alligator sinensis Alligator_sinensis_CCG018614.2 I 0.979
si:ch73-302a13.2 Gasterosteus aculeatus ENSGACG00000003620 I 0.977
GMEB2 Loxodonta africana ENSLAFG00000012335 I 0.977
ENSGMOG00000000899 Gadus morhua ENSGMOG00000000899 I 0.977
ENSAMXG00000001956 Astyanax mexicanus ENSAMXG00000001956 I 0.976
ENSTSYG00000002782 Tarsius syrichta ENSTSYG00000002782 I 0.976
GMEB1 Echinops telfairi ENSETEG00000000775 I 0.975
ENSPFOG00000002327 Poecilia formosa ENSPFOG00000002327 I 0.975
ENSTRUG00000014439 Takifugu rubripes ENSTRUG00000014439 I 0.975
ENSTNIG00000009672 Tetraodon nigroviridis ENSTNIG00000009672 I 0.974
si:ch73-302a13.2 Takifugu rubripes ENSTRUG00000012194 I 0.972
ENSLACG00000007355 Latimeria chalumnae ENSLACG00000007355 I 0.972
ENSAMXG00000015681 Astyanax mexicanus ENSAMXG00000015681 I 0.967
Ogr06841 Ophisaurus gracilis Ogr06841 I 0.966
ENSGMOG00000014002 Gadus morhua ENSGMOG00000014002 I 0.966
ENSPFOG00000004759 Poecilia formosa ENSPFOG00000004759 I 0.965
ENSXMAG00000012875 Xiphophorus maculatus ENSXMAG00000012875 I 0.965
gmeb1 Oryzias latipes ENSORLG00000008294 I 0.964
gmeb2 Xenopus tropicalis XB-GENE-5755487 I 0.960
gmeb1 Danio rerio ENSDARG00000062060 I 0.960
ENSCSAVG00000000320 Ciona savignyi ENSCSAVG00000000320 I 0.960
ENSCING00000003435 Ciona intestinalis ENSCING00000003435 D 0.960
gmeb1 Tetraodon nigroviridis ENSTNIG00000003832 I 0.958
ENSMEUG00000008516 Macropus eugenii ENSMEUG00000008516 I 0.958
ENSONIG00000007575 Oreochromis niloticus ENSONIG00000007575 I 0.958
GMEB1 Takifugu rubripes ENSTRUG00000011964 I 0.958
GMEB2 Erinaceus europaeus ENSEEUG00000001478 I 0.955
GMEB2 Microcebus murinus ENSMICG00000010614 I 0.955
GMEB2 Procavia capensis ENSPCAG00000000522 I 0.955
ENSMMUP00000008108 Macaca fascicularis ENSMMUP00000008108 I 0.955
ENSORLG00000020761 Oryzias latipes ENSORLG00000020761 I 0.951
gmeb1 Gasterosteus aculeatus ENSGACG00000007791 I 0.947
ENSGMOG00000013494 Gadus morhua ENSGMOG00000013494 I 0.945
ENSTNIG00000008152 Tetraodon nigroviridis ENSTNIG00000008152 I 0.943
GMEB1 Macaca mulatta ENSMMUG00000011390 I 0.903