gmeb2.S (Xenopus laevis)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 XB-GENE-5755500 T322292_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH

DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.990 0.880
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN

NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.988 0.853
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM

KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.988 0.853
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW

WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.988 0.853
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA

TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.988 0.853
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM

KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.988 0.853
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV

BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.988 0.853
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV

BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.988 0.853
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN

NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.988 0.867
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN

NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.986 0.787
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN

NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.986 0.787
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN

NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.986 0.773
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN

NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.986 0.773
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN

NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.986 0.773
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM

KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.986 0.773
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN

NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.986 0.773
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN

NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.984 0.747
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY

RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.984 0.733
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN

NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.956 0.627
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI57751 SAND 83 158

Links

Other SAND family TFs
Other Xenopus laevis TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Afo_R013142 Aptenodytes forsteri Afo_R013142 I 0.000
ENSAMEG00000003761 Ailuropoda melanoleuca ENSAMEG00000003761 I 0.000
ZBTB11 Bos taurus ENSBTAG00000013460 I 0.000
ENSBTAP00000017903-D1 Bos grunniens ENSBTAP00000017903-D1 I 0.000
ZBTB11 Canis familiaris ENSCAFG00000009599 I 0.000
ZBTB11 Callithrix jacchus ENSCJAG00000000499 I 0.000
ZBTB11 Cavia porcellus ENSCPOG00000000510 I 0.000
ENSCSAG00000006253 Chlorocebus sabaeus ENSCSAG00000006253 I 0.000
ZBTB11 Dasypus novemcinctus ENSDNOG00000035669 I 0.000
ZBTB11 Equus caballus ENSECAG00000024373 I 0.000
ENSFALG00000006526 Ficedula albicollis ENSFALG00000006526 I 0.000
ZBTB11 Felis catus ENSFCAG00000014254 I 0.000
ZBTB11 Homo sapiens ENSG00000066422 D 0.000
ZBTB11 Gorilla gorilla ENSGGOG00000011023 I 0.000
ZBTB11 Macaca mulatta ENSMMUG00000015060 I 0.000
ZBTB11 Monodelphis domestica ENSMODG00000001927 I 0.000
ENSMPUG00000011727 Mustela putorius furo ENSMPUG00000011727 I 0.000
Zbtb11 Mus musculus ENSMUSG00000022601 I 0.000
ENSNLEG00000003243 Nomascus leucogenys ENSNLEG00000003243 I 0.000
ZBTB11 Ornithorhynchus anatinus ENSOANG00000007506 I 0.000
ENSOARG00000018474 Ovis aries ENSOARG00000018474 I 0.000
ZBTB11 Oryctolagus cuniculus ENSOCUG00000017649 I 0.000
ENSP00000326200 Macaca fascicularis ENSP00000326200 I 0.000
ENSPANG00000021636 Papio anubis ENSPANG00000021636 I 0.000
ENSPPYG00000013589 Pongo abelii ENSPPYG00000013589 I 0.000
ZBTB11 Pan troglodytes ENSPTRG00000015174 I 0.000
ENSSHAG00000008340 Sarcophilus harrisii ENSSHAG00000008340 I 0.000
ZBTB11 Sus scrofa ENSSSCG00000011953 I 0.000
ENSSTOG00000012200 Ictidomys tridecemlineatus ENSSTOG00000012200 I 0.000
ZBTB11 Taeniopygia guttata ENSTGUG00000013619 I 0.000
ZBTB11 Tursiops truncatus ENSTTRG00000002849 I 0.000
Gfo_R002581 Geospiza fortis Gfo_R002581 I 0.000
Ogr07122 Ophisaurus gracilis Ogr07122 I 0.000