gmeb2.S (Xenopus laevis)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01342 (SAND) IPR000770 XB-GENE-5755500 T322292_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GMEB2
M02462_2.00
Meleagris gallopavo
BBACGYH

DRCGTVV
PBM
Weirauch et al.(2014)
pTH9211
0.990 0.880
Gmeb2
M00824_2.00
Mus musculus
NNACGYNN

NNRCGTNN
PBM
Weirauch et al.(2013)
pTH3084
0.988 0.853
GMEB2
M03471_2.00
Homo sapiens
YBACGYAM

KTRCGTVR
SELEX
Jolma et al.(2013)
GMEB2_1
0.988 0.853
GMEB2
M03472_2.00
Homo sapiens
WACGTGSTYACGYW

WRCGTRASCACGTW
SELEX
Jolma et al.(2013)
GMEB2_2
0.988 0.853
GMEB2
M03473_2.00
Homo sapiens
YACGTAACBBACGYA

TRCGTVVGTTACGTR
SELEX
Jolma et al.(2013)
GMEB2_3
0.988 0.853
GMEB2
M03474_2.00
Homo sapiens
BKACGTAM

KTACGTMV
SELEX
Jolma et al.(2013)
GMEB2_4
0.988 0.853
GMEB2
M05735_2.00
Homo sapiens
BYACGTAVSBTACGTRV

BYACGTAVSBTACGTRV
SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX
0.988 0.853
GMEB2
M05736_2.00
Homo sapiens
BBACGYAMVBNACGYVV

BBRCGTNVBKTRCGTVV
SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX
0.988 0.853
GMEB2
M02458_2.00
Anolis carolinensis
NNACGYANN

NNTRCGTNN
PBM
Weirauch et al.(2014)
pTH9219
0.988 0.867
GMEB1
M02461_2.00
Meleagris gallopavo
NNACGYNNN

NNNRCGTNN
PBM
Weirauch et al.(2014)
pTH8318
0.986 0.787
ENSMODG00000010947
M02463_2.00
Monodelphis domestica
NNRCGYN

NRCGYNN
PBM
Weirauch et al.(2014)
pTH8671
0.986 0.787
GMEB1
M02460_2.00
Homo sapiens
NNVCGYNNN

NNNRCGBNN
PBM
Weirauch et al.(2014)
pTH9026
0.986 0.773
Gmeb1
M00190_2.00
Mus musculus
NNRCGYNNN

NNNRCGYNN
PBM
Badis et al.(2009)
Gmeb1_1745
0.986 0.773
GMEB1
M02465_2.00
Pteropus vampyrus
NBACGYHN

NDRCGTVN
PBM
Weirauch et al.(2014)
pTH9282
0.986 0.773
GMEB1
M05737_2.00
Homo sapiens
KKACGTAMNKTACGTAM

KTACGTAMNKTACGTMM
SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX
0.986 0.773
GMEB1
M05738_2.00
Homo sapiens
KNRCGTVRBBVCGYHN

NDRCGBVVYBACGYNM
SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX
0.986 0.773
gmeb1
M02468_2.00
Xenopus tropicalis
NNRCGYNNN

NNNRCGYNN
PBM
Weirauch et al.(2014)
pTH8745
0.984 0.747
gmeb1.S
M02469_2.00
Xenopus laevis
NKACGTVY

RBACGTMN
PBM
Weirauch et al.(2014)
pTH9298
0.984 0.733
ENSCING00000003435
M02459_2.00
Ciona intestinalis
NKACGTMVNN

NNBKACGTMN
PBM
Weirauch et al.(2014)
pTH9356
0.956 0.627
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI57751 SAND 83 158

Links

Other SAND family TFs
Other Xenopus laevis TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAH84751 Xenopus laevis AAH84751 I 0.992
Aan_R005833 Calypte anna Aan_R005833 I 0.987
Aan_R015716 Calypte anna Aan_R015716 I 0.991
Afo_R008896 Aptenodytes forsteri Afo_R008896 I 0.986
Afo_R010444 Aptenodytes forsteri Afo_R010444 I 0.990
Alligator_sinensis_CCG018614.2 Alligator sinensis Alligator_sinensis_CCG018614.2 I 0.987
Alligator_sinensis_CCG020726.1 Alligator sinensis Alligator_sinensis_CCG020726.1 I 0.986
Brh_R002176 Buceros rhinoceros Brh_R002176 I 0.991
Brh_R012802 Buceros rhinoceros Brh_R012802 I 0.986
Cmyd_10009585 Chelonia mydas Cmyd_10009585 I 0.990
Cmyd_10009780 Chelonia mydas Cmyd_10009780 I 0.986
ENSACAG00000010878 Anolis carolinensis ENSACAG00000010878 I 0.987
ENSAMEG00000001647 Ailuropoda melanoleuca ENSAMEG00000001647 I 0.988
ENSAMEG00000011405 Ailuropoda melanoleuca ENSAMEG00000011405 I 0.986
ENSAMXG00000001001 Astyanax mexicanus ENSAMXG00000001001 I 0.982
ENSAMXG00000001956 Astyanax mexicanus ENSAMXG00000001956 I 0.970
ENSAMXG00000015681 Astyanax mexicanus ENSAMXG00000015681 I 0.959
ENSAPLG00000002955 Anas platyrhynchos ENSAPLG00000002955 I 0.986
ENSAPLG00000010816 Anas platyrhynchos ENSAPLG00000010816 I 0.992
ENSCING00000003435 Ciona intestinalis ENSCING00000003435 D 0.956
ENSCPOG00000013402 Cavia porcellus ENSCPOG00000013402 I 0.986
ENSCSAG00000001017 Chlorocebus sabaeus ENSCSAG00000001017 I 0.986
ENSCSAG00000016428 Chlorocebus sabaeus ENSCSAG00000016428 I 0.988
ENSCSAVG00000000320 Ciona savignyi ENSCSAVG00000000320 I 0.956
ENSFALG00000001378 Ficedula albicollis ENSFALG00000001378 I 0.986
ENSFALG00000005856 Ficedula albicollis ENSFALG00000005856 I 0.991
ENSGALG00000000981 Gallus gallus ENSGALG00000000981 I 0.986
ENSGALG00000027470 Gallus gallus ENSGALG00000027470 I 0.990
ENSGMOG00000000899 Gadus morhua ENSGMOG00000000899 I 0.973
ENSGMOG00000013494 Gadus morhua ENSGMOG00000013494 I 0.932
ENSGMOG00000014002 Gadus morhua ENSGMOG00000014002 I 0.958
ENSLACG00000007355 Latimeria chalumnae ENSLACG00000007355 I 0.986
ENSLACG00000011757 Latimeria chalumnae ENSLACG00000011757 I 0.985
ENSLOCG00000001741 Lepisosteus oculatus ENSLOCG00000001741 I 0.987
ENSLOCG00000003512 Lepisosteus oculatus ENSLOCG00000003512 I 0.980
ENSMEUG00000004906 Macropus eugenii ENSMEUG00000004906 I 0.986
ENSMEUG00000008516 Macropus eugenii ENSMEUG00000008516 I 0.968
ENSMMUG00000006168 Macaca mulatta ENSMMUG00000006168 I 0.988
ENSMMUP00000008108 Macaca fascicularis ENSMMUP00000008108 I 0.966
ENSMODG00000010947 Monodelphis domestica ENSMODG00000010947 D 0.986
ENSMPUG00000008374 Mustela putorius furo ENSMPUG00000008374 I 0.988
ENSMPUG00000015503 Mustela putorius furo ENSMPUG00000015503 I 0.986
ENSNLEG00000009837 Nomascus leucogenys ENSNLEG00000009837 I 0.986
ENSNLEG00000010094 Nomascus leucogenys ENSNLEG00000010094 I 0.988
ENSOARG00000002809 Ovis aries ENSOARG00000002809 I 0.986
ENSOARG00000010596 Ovis aries ENSOARG00000010596 I 0.988
ENSONIG00000007575 Oreochromis niloticus ENSONIG00000007575 I 0.948
ENSONIG00000017972 Oreochromis niloticus ENSONIG00000017972 I 0.979
ENSORLG00000020761 Oryzias latipes ENSORLG00000020761 I 0.954
ENSP00000266068-D1 Bos grunniens ENSP00000266068-D1 I 0.988
ENSP00000294409-D1 Bos grunniens ENSP00000294409-D1 I 0.986
ENSP00000381890 Macaca fascicularis ENSP00000381890 I 0.986
ENSPANG00000018743 Papio anubis ENSPANG00000018743 I 0.986
ENSPANG00000024129 Papio anubis ENSPANG00000024129 I 0.988
ENSPFOG00000002327 Poecilia formosa ENSPFOG00000002327 I 0.968
ENSPFOG00000004759 Poecilia formosa ENSPFOG00000004759 I 0.956
ENSPFOG00000017553 Poecilia formosa ENSPFOG00000017553 I 0.979
ENSPPYG00000001635 Pongo abelii ENSPPYG00000001635 I 0.986
ENSPPYG00000011242 Pongo abelii ENSPPYG00000011242 I 0.988
ENSPSIG00000013495 Pelodiscus sinensis ENSPSIG00000013495 I 0.990
ENSPSIG00000016715 Pelodiscus sinensis ENSPSIG00000016715 I 0.987
ENSSHAG00000009099 Sarcophilus harrisii ENSSHAG00000009099 I 0.986
ENSSHAG00000018066 Sarcophilus harrisii ENSSHAG00000018066 I 0.989
ENSSTOG00000023031 Ictidomys tridecemlineatus ENSSTOG00000023031 I 0.988
ENSTNIG00000008152 Tetraodon nigroviridis ENSTNIG00000008152 I 0.935
ENSTNIG00000009672 Tetraodon nigroviridis ENSTNIG00000009672 I 0.968
ENSTRUG00000014439 Takifugu rubripes ENSTRUG00000014439 I 0.968
ENSTSYG00000002782 Tarsius syrichta ENSTSYG00000002782 I 0.966
ENSXMAG00000012852 Xiphophorus maculatus ENSXMAG00000012852 I 0.979
ENSXMAG00000012875 Xiphophorus maculatus ENSXMAG00000012875 I 0.956
Gfo_R005287 Geospiza fortis Gfo_R005287 I 0.991
Gfo_R008934 Geospiza fortis Gfo_R008934 I 0.986
Gmeb1 Rattus norvegicus ENSRNOG00000010910 I 0.986
gmeb1 Tetraodon nigroviridis ENSTNIG00000003832 I 0.948
GMEB1 Vicugna pacos ENSVPAG00000006781 I 0.986
GMEB1 Tursiops truncatus ENSTTRG00000013602 I 0.986
GMEB1 Taeniopygia guttata ENSTGUG00000000731 I 0.986
GMEB1 Takifugu rubripes ENSTRUG00000011964 I 0.948
GMEB1 Sorex araneus ENSSARG00000001145 I 0.986
gmeb1 Xenopus tropicalis XB-GENE-1002169 D 0.984
GMEB1 Pan troglodytes ENSPTRG00000000438 I 0.986
GMEB1 Pteropus vampyrus ENSPVAG00000017223 D 0.986
GMEB1 Meleagris gallopavo ENSMGAG00000001716 D 0.986
GMEB1 Macaca mulatta ENSMMUG00000011390 I 0.856
GMEB1 Callithrix jacchus ENSCJAG00000009754 I 0.986
gmeb1 Danio rerio ENSDARG00000062060 I 0.950
GMEB1 Dasypus novemcinctus ENSDNOG00000025258 I 0.986
GMEB1 Myotis lucifugus ENSMLUG00000012602 I 0.986
GMEB1 Equus caballus ENSECAG00000009764 I 0.986
GMEB1 Loxodonta africana ENSLAFG00000011849 I 0.986
GMEB1 Gorilla gorilla ENSGGOG00000009221 I 0.986
gmeb1 Gasterosteus aculeatus ENSGACG00000007791 I 0.938
GMEB1 Echinops telfairi ENSETEG00000000775 I 0.966
GMEB1 Felis catus ENSFCAG00000018209 I 0.986
Gmeb1 Mus musculus ENSMUSG00000028901 D 0.986
GMEB1 Bos taurus ENSBTAG00000001160 I 0.986
GMEB1 Homo sapiens ENSG00000162419 D 0.986
GMEB1 Oryctolagus cuniculus ENSOCUG00000010893 I 0.986
GMEB1 Ornithorhynchus anatinus ENSOANG00000006127 I 0.986
gmeb1 Oryzias latipes ENSORLG00000008294 I 0.955
GMEB1 Canis familiaris ENSCAFG00000011711 I 0.986
gmeb1.S Xenopus laevis XB-GENE-1002174 D 0.984
GMEB2 Anolis carolinensis ENSACAG00000011613 D 0.988
GMEB2 Erinaceus europaeus ENSEEUG00000001478 I 0.966
GMEB2 Equus caballus ENSECAG00000019377 I 0.988
GMEB2 Canis familiaris ENSCAFG00000013008 I 0.988
GMEB2 Loxodonta africana ENSLAFG00000012335 I 0.986
GMEB2 Dasypus novemcinctus ENSDNOG00000041843 I 0.988
gmeb2 Xenopus tropicalis XB-GENE-5755487 I 0.981
GMEB2 Danio rerio ENSDARG00000093240 I 0.978
GMEB2 Bos taurus ENSBTAG00000014769 I 0.988
GMEB2 Callithrix jacchus ENSCJAG00000010283 I 0.988
GMEB2 Felis catus ENSFCAG00000031273 I 0.988
GMEB2 Homo sapiens ENSG00000101216 D 0.988
GMEB2 Monodelphis domestica ENSMODG00000016974 I 0.989
Gmeb2 Mus musculus ENSMUSG00000038705 D 0.988
Gmeb2 Rattus norvegicus ENSRNOG00000013339 I 0.988
GMEB2 Ornithorhynchus anatinus ENSOANG00000004939 I 0.989
GMEB2 Pteropus vampyrus ENSPVAG00000013473 I 0.988
GMEB2 Pan troglodytes ENSPTRG00000013744 I 0.988
GMEB2 Oryctolagus cuniculus ENSOCUG00000025815 I 0.988
GMEB2 Otolemur garnettii ENSOGAG00000008826 I 0.988
GMEB2 Procavia capensis ENSPCAG00000000522 I 0.967
GMEB2 Myotis lucifugus ENSMLUG00000014606 I 0.988
GMEB2 Taeniopygia guttata ENSTGUG00000006996 I 0.991
GMEB2 Cavia porcellus ENSCPOG00000025567 I 0.988
GMEB2 Microcebus murinus ENSMICG00000010614 I 0.966
GMEB2 Meleagris gallopavo ENSMGAG00000006922 D 0.990
GMEB2 Gorilla gorilla ENSGGOG00000008653 I 0.988
Myotis_brandtii_GMEB1_10029602 Myotis brandtii Myotis_brandtii_GMEB1_10029602 I 0.986
Myotis_brandtii_GMEB2_10023457 Myotis brandtii Myotis_brandtii_GMEB2_10023457 I 0.988
Ogr01986 Ophisaurus gracilis Ogr01986 I 0.986
Ogr06841 Ophisaurus gracilis Ogr06841 I 0.976
Pvit_01323 Pogona vitticeps Pvit_01323 I 0.988
Pvit_15570 Pogona vitticeps Pvit_15570 I 0.986
si:ch73-302a13.2 Gasterosteus aculeatus ENSGACG00000003620 I 0.973
si:ch73-302a13.2 Tetraodon nigroviridis ENSTNIG00000002528 I 0.976
si:ch73-302a13.2 Takifugu rubripes ENSTRUG00000012194 I 0.965
Tal_R007596 Tyto alba Tal_R007596 I 0.991