AMTR_s00022p00198330 (Amborella trichopoda)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AMTR_s00022p00198330 T322378_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.914 0.813
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.894 0.680
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.891 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11629 SBP 54 128

Links

Other SBP family TFs
Other Amborella trichopoda TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.963
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.963
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.963
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.963
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.963
TCM_024873 Theobroma cacao TCM_024873 I 0.962
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.962
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.962
29269.m000250 Ricinus communis 29269.m000250 I 0.962
mgf012995m Mimulus guttatus mgf012995m I 0.961
PK18312.1 Cannabis sativa PK18312.1 I 0.960
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.960
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.960
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.958
mgf001295m Mimulus guttatus mgf001295m I 0.957
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.956
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.956
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.956
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.955
OB09G21350 Oryza brachyantha OB09G21350 N 0.955
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.954
Si030195m.g Setaria italica Si030195m.g I 0.954
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.954
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.954
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.953
OBART09G14800 Oryza barthii OBART09G14800 I 0.953
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.953
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.953
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.953
OB08G26920 Oryza brachyantha OB08G26920 I 0.953
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.953
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.953
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.953
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.953
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.953
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.953
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.953
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.952
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.951
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.951
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.951
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.951
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.951
Pm002693 Prunus mume Pm002693 I 0.951
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.951
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.951
SPL14 Oryza sativa OS08G0509600 I 0.951
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.951
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.951
MDP0000297978 Malus domestica MDP0000297978 I 0.951
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.950
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.950
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.950
Si013870m.g Setaria italica Si013870m.g I 0.948
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.947
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.947
Ca_07299 Cicer arietinum Ca_07299 I 0.946
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.945
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.945
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.944
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.944
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.942
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.939
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.938
F775_10743 Aegilops tauschii F775_10743 I 0.937
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.937
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.937
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.932
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.932
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.930
Pm007035 Prunus mume Pm007035 I 0.929
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.929
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.928
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.928
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.927
Bo2g062840 Brassica oleracea Bo2g062840 I 0.926
Bra038324 Brassica rapa Bra038324 I 0.926
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.926
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.925
OS09G0491532 Oryza sativa OS09G0491532 I 0.923
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.923
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.923
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.922
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.922
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.922
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.920
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.920
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.919
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.919
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.918
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.918
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.918
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.916
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.916
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.916
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.915
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.915
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.915
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.914
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.914
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.914
Cla002263 Citrullus lanatus Cla002263 I 0.913
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.913
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.912
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.912
Pm030597 Prunus mume Pm030597 I 0.912
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.911
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.911
F775_02791 Aegilops tauschii F775_02791 I 0.911
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.911
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.911
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.911
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.911
Bra004363 Brassica rapa Bra004363 N 0.911
Bo6g108620 Brassica oleracea Bo6g108620 N 0.911
SPL6 Arabidopsis thaliana AT1G69170 I 0.911
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.908
MDP0000149339 Malus domestica MDP0000149339 I 0.908
Si010262m.g Setaria italica Si010262m.g I 0.907
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.907
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.907
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.906
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.906
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.904
PK11310.1 Cannabis sativa PK11310.1 I 0.904
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.904
mgf001202m Mimulus guttatus mgf001202m I 0.904
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.903
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.903
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.903
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.903
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.903
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.903
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.903
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.902
Ca_24655 Cicer arietinum Ca_24655 I 0.902
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.902
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.902
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.902
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.902
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.902
MDP0000861601 Malus domestica MDP0000861601 I 0.900
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.900
MDP0000156994 Malus domestica MDP0000156994 I 0.900
30170.m014245 Ricinus communis 30170.m014245 I 0.900
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.900
PK25661.1 Cannabis sativa PK25661.1 I 0.900
MDP0000171877 Malus domestica MDP0000171877 I 0.900
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.900
MDP0000246046 Malus domestica MDP0000246046 I 0.900
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.899
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.899
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.899
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.899
MDP0000589558 Malus domestica MDP0000589558 I 0.899
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.899
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.899
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.899
28211.m000132 Ricinus communis 28211.m000132 I 0.899
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.897
Pm025028 Prunus mume Pm025028 I 0.897
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.896
Ca_18591 Cicer arietinum Ca_18591 I 0.896
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.896
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.896
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.896
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.896
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.896
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.896
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.896
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.895
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.895
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.895
Si013151m.g Setaria italica Si013151m.g I 0.895
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.895
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.895
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.895
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.895
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I 0.895
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.895
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.894
SPL4 Arabidopsis thaliana AT1G53160 D 0.894
TCM_011483 Theobroma cacao TCM_011483 I 0.893
AMTR_s00062p00211520 Amborella trichopoda AMTR_s00062p00211520 I 0.892
MDP0000919693 Malus domestica MDP0000919693 I 0.892
MDP0000919694 Malus domestica MDP0000919694 I 0.892
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.891
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.891
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I 0.891
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I 0.891
MDP0000180408 Malus domestica MDP0000180408 I 0.891
TCM_031595 Theobroma cacao TCM_031595 I 0.891
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I 0.891
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D 0.891
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.891
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.891
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I 0.891
TCM_034803 Theobroma cacao TCM_034803 I 0.891
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.890
F775_27970 Aegilops tauschii F775_27970 I 0.890
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I 0.890
TRIUR3_31982 Triticum urartu TRIUR3_31982 I 0.890
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.890
MLOC_4792 Hordeum vulgare MLOC_4792 I 0.890
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I 0.890
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I 0.890
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.890
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.889
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.889
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.889
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.888
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.888
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.888
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.888
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.888
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.888
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.888
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.888
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.888
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.888
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.888
Cla017596 Citrullus lanatus Cla017596 I 0.888
Si026656m.g Setaria italica Si026656m.g I 0.887
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.887
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.887
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.887
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.887
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.887
Bra038101 Brassica rapa Bra038101 I 0.887
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.887
SPL19 Oryza sativa OS11G0496600 I 0.887
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.886
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.886
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.886
TCM_021482 Theobroma cacao TCM_021482 I 0.886
Bra027265 Brassica rapa Bra027265 I 0.886
Bo5g127310 Brassica oleracea Bo5g127310 I 0.886
Bo2g091010 Brassica oleracea Bo2g091010 I 0.886
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.886
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.886
Traes_5DL_C588E74B5 Triticum aestivum Traes_5DL_C588E74B5 N 0.593