CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AMTR_s00022p00198330
(
Amborella trichopoda
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
AMTR_s00022p00198330
T322378_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.914
0.813
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.894
0.680
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG
CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.891
0.693
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN11629
SBP
54
128
CQVEGCKADLTGAKPYYCRHKVCGAHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Amborella trichopoda
TFs
241 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10012020.g
Linum usitatissimum
Lus10012020.g
I
0.963
GSMUA_Achr7G20510_001
Musa acuminata
GSMUA_Achr7G20510_001
I
0.963
GSMUA_Achr8G25550_001
Musa acuminata
GSMUA_Achr8G25550_001
I
0.963
Lus10016275.g
Linum usitatissimum
Lus10016275.g
I
0.963
GSMUA_Achr9G27660_001
Musa acuminata
GSMUA_Achr9G27660_001
I
0.963
TCM_024873
Theobroma cacao
TCM_024873
I
0.962
GSMUA_Achr6G22280_001
Musa acuminata
GSMUA_Achr6G22280_001
I
0.962
VIT_08s0007g06270
Vitis vinifera
VIT_08s0007g06270
I
0.962
29269.m000250
Ricinus communis
29269.m000250
I
0.962
mgf012995m
Mimulus guttatus
mgf012995m
I
0.961
PK18312.1
Cannabis sativa
PK18312.1
I
0.960
BRADI3G40030
Brachypodium distachyon
BRADI3G40030
I
0.960
Eucgr.A02441
Eucalyptus grandis
Eucgr.A02441
I
0.960
GLYMA19G32800
Glycine max
GLYMA19G32800
I
0.958
mgf001295m
Mimulus guttatus
mgf001295m
I
0.957
MTR_1g053715
Medicago truncatula
MTR_1g053715
I
0.956
Aquca_009_00161
Aquilegia coerulea
Aquca_009_00161
I
0.956
Cucsa.242790
Cucumis sativus
Cucsa.242790
I
0.956
GLYMA03G29901
Glycine max
GLYMA03G29901
I
0.955
OB09G21350
Oryza brachyantha
OB09G21350
N
0.955
Pavir.Ba01711
Panicum virgatum
Pavir.Ba01711
I
0.954
Si030195m.g
Setaria italica
Si030195m.g
I
0.954
Pavir.J11258
Panicum virgatum
Pavir.J11258
I
0.954
Gorai.002G156700
Gossypium raimondii
Gorai.002G156700
I
0.954
Lus10021034.g
Linum usitatissimum
Lus10021034.g
I
0.953
OBART09G14800
Oryza barthii
OBART09G14800
I
0.953
Traes_5BL_96D5EA4EE
Triticum aestivum
Traes_5BL_96D5EA4EE
I
0.953
Ciclev10011938m.g
Citrus clementina
Ciclev10011938m.g
I
0.953
Lus10023818.g
Linum usitatissimum
Lus10023818.g
I
0.953
OB08G26920
Oryza brachyantha
OB08G26920
I
0.953
OGLUM09G15430
Oryza glumaepatula
OGLUM09G15430
I
0.953
orange1.1g046416m.g
Citrus sinensis
orange1.1g046416m.g
I
0.953
ORGLA09G0114000
Oryza glaberrima
ORGLA09G0114000
I
0.953
ORUFI09G15960
Oryza rufipogon
ORUFI09G15960
I
0.953
OMERI09G11520
Oryza meridionalis
OMERI09G11520
I
0.953
OPUNC09G13250
Oryza punctata
OPUNC09G13250
I
0.953
ONIVA09G15400
Oryza nivara
ONIVA09G15400
I
0.953
Eucgr.K01828
Eucalyptus grandis
Eucgr.K01828
I
0.952
ORUFI08G22440
Oryza rufipogon
ORUFI08G22440
I
0.951
ONIVA08G22610
Oryza nivara
ONIVA08G22610
I
0.951
Sb07g027740
Sorghum bicolor
Sb07g027740
I
0.951
ORGLA08G0176500
Oryza glaberrima
ORGLA08G0176500
I
0.951
PRUPE_ppa007056mg
Prunus persica
PRUPE_ppa007056mg
I
0.951
Pm002693
Prunus mume
Pm002693
I
0.951
OPUNC08G18140
Oryza punctata
OPUNC08G18140
I
0.951
OGLUM08G21260
Oryza glumaepatula
OGLUM08G21260
I
0.951
SPL14
Oryza sativa
OS08G0509600
I
0.951
PRUPE_ppa021582mg
Prunus persica
PRUPE_ppa021582mg
I
0.951
LPERR08G16940
Leersia perrieri
LPERR08G16940
I
0.951
MDP0000297978
Malus domestica
MDP0000297978
I
0.951
TRIUR3_23872
Triticum urartu
TRIUR3_23872
I
0.950
BRADI4G33770
Brachypodium distachyon
BRADI4G33770
I
0.950
SapurV1A.0018s0470
Salix purpurea
SapurV1A.0018s0470
I
0.950
Si013870m.g
Setaria italica
Si013870m.g
I
0.948
Pavir.Fb01946
Panicum virgatum
Pavir.Fb01946
I
0.947
GSMUA_Achr3G11170_001
Musa acuminata
GSMUA_Achr3G11170_001
I
0.947
Ca_07299
Cicer arietinum
Ca_07299
I
0.946
LPERR09G10900
Leersia perrieri
LPERR09G10900
I
0.945
Sb02g028420
Sorghum bicolor
Sb02g028420
I
0.945
gene22660-v1.0-hybrid
Fragaria vesca
gene22660-v1.0-hybrid
I
0.944
MTR_7g092930
Medicago truncatula
MTR_7g092930
I
0.944
GSMUA_Achr5G25090_001
Musa acuminata
GSMUA_Achr5G25090_001
I
0.942
GRMZM2G307588
Zea mays
GRMZM2G307588
I
0.939
GSMUA_Achr7G02020_001
Musa acuminata
GSMUA_Achr7G02020_001
I
0.938
F775_10743
Aegilops tauschii
F775_10743
I
0.937
GSMUA_Achr4G16050_001
Musa acuminata
GSMUA_Achr4G16050_001
I
0.937
GRMZM2G126018
Zea mays
GRMZM2G126018
I
0.937
GLYMA01G08056
Glycine max
GLYMA01G08056
I
0.932
GLYMA02G13371
Glycine max
GLYMA02G13371
I
0.932
Gorai.006G066700
Gossypium raimondii
Gorai.006G066700
I
0.930
Pm007035
Prunus mume
Pm007035
I
0.929
Sb06g024630
Sorghum bicolor
Sb06g024630
I
0.929
POPTR_0008s09810
Populus trichocarpa
POPTR_0008s09810
I
0.928
SapurV1A.0176s0510
Salix purpurea
SapurV1A.0176s0510
I
0.928
Pavir.Fa00457
Panicum virgatum
Pavir.Fa00457
I
0.927
Bo2g062840
Brassica oleracea
Bo2g062840
I
0.926
Bra038324
Brassica rapa
Bra038324
I
0.926
GLYMA02G30670
Glycine max
GLYMA02G30670
I
0.926
Gorai.007G362000
Gossypium raimondii
Gorai.007G362000
I
0.925
OS09G0491532
Oryza sativa
OS09G0491532
I
0.923
POPTR_0001s40870
Populus trichocarpa
POPTR_0001s40870
I
0.923
BGIOSGA029541
Oryza indica
BGIOSGA029541
I
0.923
MTR_1g035010
Medicago truncatula
MTR_1g035010
I
0.922
POPTR_0011s11770
Populus trichocarpa
POPTR_0011s11770
I
0.922
SapurV1A.0156s0200
Salix purpurea
SapurV1A.0156s0200
I
0.922
gw1.313.30.1
Physcomitrella patens
gw1.313.30.1
I
0.920
GSMUA_Achr9G22260_001
Musa acuminata
GSMUA_Achr9G22260_001
I
0.920
GSMUA_Achr2G03070_001
Musa acuminata
GSMUA_Achr2G03070_001
I
0.919
GRMZM2G160917
Zea mays
GRMZM2G160917
I
0.919
GLYMA07G19770
Glycine max
GLYMA07G19770
I
0.918
GLYMA20G00900
Glycine max
GLYMA20G00900
I
0.918
LjT35D18.50.nc
Lotus japonicus
LjT35D18.50.nc
I
0.918
gene29149-v1.0-hybrid
Fragaria vesca
gene29149-v1.0-hybrid
I
0.916
GSMUA_Achr7G22940_001
Musa acuminata
GSMUA_Achr7G22940_001
I
0.916
Gorai.013G095700
Gossypium raimondii
Gorai.013G095700
I
0.916
GSMUA_Achr4G03880_001
Musa acuminata
GSMUA_Achr4G03880_001
I
0.915
SapurV1A.1264s0060
Salix purpurea
SapurV1A.1264s0060
I
0.915
cassava7404.valid.m1
Manihot esculenta
cassava7404.valid.m1
I
0.915
LjSGA_121222.1
Lotus japonicus
LjSGA_121222.1
I
0.914
fgenesh1_pg.scaffold_50000083
Physcomitrella patens
fgenesh1_pg.scaffold_50000083
I
0.914
estExt_fgenesh1_pg.C_1940033
Physcomitrella patens
estExt_fgenesh1_pg.C_1940033
D
0.914
Cla002263
Citrullus lanatus
Cla002263
I
0.913
GLYMA18G36960
Glycine max
GLYMA18G36960
I
0.913
PRUPE_ppa017695mg
Prunus persica
PRUPE_ppa017695mg
I
0.912
gene04565-v1.0-hybrid
Fragaria vesca
gene04565-v1.0-hybrid
I
0.912
Pm030597
Prunus mume
Pm030597
I
0.912
Solyc10g078700.1
Solanum lycopersicum
Solyc10g078700.1
I
0.911
Sb05g017510
Sorghum bicolor
Sb05g017510
I
0.911
F775_02791
Aegilops tauschii
F775_02791
I
0.911
MLOC_69667
Hordeum vulgare
MLOC_69667
I
0.911
PGSC0003DMG400011433
Solanum tuberosum
PGSC0003DMG400011433
I
0.911
Traes_2BL_69E6AB6D1
Triticum aestivum
Traes_2BL_69E6AB6D1
I
0.911
Traes_2AL_B45245746
Triticum aestivum
Traes_2AL_B45245746
I
0.911
Bra004363
Brassica rapa
Bra004363
N
0.911
Bo6g108620
Brassica oleracea
Bo6g108620
N
0.911
SPL6
Arabidopsis thaliana
AT1G69170
I
0.911
fgenesh1_pg.C_scaffold_2001253
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001253
I
0.908
MDP0000149339
Malus domestica
MDP0000149339
I
0.908
Si010262m.g
Setaria italica
Si010262m.g
I
0.907
GRMZM2G148467
Zea mays
GRMZM2G148467
I
0.907
GSMUA_Achr11G19580_001
Musa acuminata
GSMUA_Achr11G19580_001
I
0.907
orange1.1g032937m.g
Citrus sinensis
orange1.1g032937m.g
I
0.906
Ciclev10009879m.g
Citrus clementina
Ciclev10009879m.g
I
0.906
SapurV1A.0118s0110
Salix purpurea
SapurV1A.0118s0110
I
0.904
PK11310.1
Cannabis sativa
PK11310.1
I
0.904
SapurV1A.3749s0010
Salix purpurea
SapurV1A.3749s0010
I
0.904
mgf001202m
Mimulus guttatus
mgf001202m
I
0.904
cassava37839.valid.m1
Manihot esculenta
cassava37839.valid.m1
I
0.903
Traes_2BS_186EA570A
Triticum aestivum
Traes_2BS_186EA570A
I
0.903
TRIUR3_23102
Triticum urartu
TRIUR3_23102
I
0.903
GSMUA_AchrUn_randomG05850_001
Musa acuminata
GSMUA_AchrUn_randomG05850_001
I
0.903
Ciclev10016841m.g
Citrus clementina
Ciclev10016841m.g
I
0.903
estExt_fgenesh1_pg.C_1940032
Physcomitrella patens
estExt_fgenesh1_pg.C_1940032
I
0.903
MLOC_13032
Hordeum vulgare
MLOC_13032
I
0.903
GRMZM2G169270
Zea mays
GRMZM2G169270
I
0.902
Ca_24655
Cicer arietinum
Ca_24655
I
0.902
Ciclev10031270m.g
Citrus clementina
Ciclev10031270m.g
I
0.902
GRMZM2G098557
Zea mays
GRMZM2G098557
I
0.902
orange1.1g029650m.g
Citrus sinensis
orange1.1g029650m.g
I
0.902
orange1.1g009653m.g
Citrus sinensis
orange1.1g009653m.g
I
0.902
Sb07g027420
Sorghum bicolor
Sb07g027420
I
0.902
MDP0000861601
Malus domestica
MDP0000861601
I
0.900
orange1.1g001317m.g
Citrus sinensis
orange1.1g001317m.g
I
0.900
MDP0000156994
Malus domestica
MDP0000156994
I
0.900
30170.m014245
Ricinus communis
30170.m014245
I
0.900
Ciclev10000100m.g
Citrus clementina
Ciclev10000100m.g
I
0.900
PK25661.1
Cannabis sativa
PK25661.1
I
0.900
MDP0000171877
Malus domestica
MDP0000171877
I
0.900
BRADI1G26720
Brachypodium distachyon
BRADI1G26720
I
0.900
MDP0000246046
Malus domestica
MDP0000246046
I
0.900
Eucgr.B00631
Eucalyptus grandis
Eucgr.B00631
I
0.899
Gorai.003G102800
Gossypium raimondii
Gorai.003G102800
I
0.899
GSMUA_Achr7G20620_001
Musa acuminata
GSMUA_Achr7G20620_001
I
0.899
gene26117-v1.0-hybrid
Fragaria vesca
gene26117-v1.0-hybrid
I
0.899
MDP0000589558
Malus domestica
MDP0000589558
I
0.899
orange1.1g008680m.g
Citrus sinensis
orange1.1g008680m.g
I
0.899
Ciclev10019546m.g
Citrus clementina
Ciclev10019546m.g
I
0.899
PRUPE_ppa003644mg
Prunus persica
PRUPE_ppa003644mg
I
0.899
28211.m000132
Ricinus communis
28211.m000132
I
0.899
PRUPE_ppa023657mg
Prunus persica
PRUPE_ppa023657mg
I
0.897
Pm025028
Prunus mume
Pm025028
I
0.897
POPTR_0010s16370
Populus trichocarpa
POPTR_0010s16370
I
0.896
Ca_18591
Cicer arietinum
Ca_18591
I
0.896
Aquca_029_00063
Aquilegia coerulea
Aquca_029_00063
I
0.896
MTR_2g046550
Medicago truncatula
MTR_2g046550
I
0.896
Thhalv10011728m.g
Eutrema salsugineum
Thhalv10011728m.g
I
0.896
GLYMA07G36180
Glycine max
GLYMA07G36180
I
0.896
POPTR_0007s01030
Populus trichocarpa
POPTR_0007s01030
I
0.896
GSMUA_Achr1G08440_001
Musa acuminata
GSMUA_Achr1G08440_001
I
0.896
Gorai.005G071400
Gossypium raimondii
Gorai.005G071400
I
0.896
LPERR08G17180
Leersia perrieri
LPERR08G17180
I
0.895
evm.TU.supercontig_80.88
Carica papaya
evm.TU.supercontig_80.88
I
0.895
AMTR_s00022p00106940
Amborella trichopoda
AMTR_s00022p00106940
I
0.895
Si013151m.g
Setaria italica
Si013151m.g
I
0.895
PDK_20s1709081g002
Phoenix dactylifera
PDK_20s1709081g002
I
0.895
GSMUA_Achr9G01380_001
Musa acuminata
GSMUA_Achr9G01380_001
I
0.895
VIT_18s0122g00380
Vitis vinifera
VIT_18s0122g00380
I
0.895
PGSC0003DMG400027151
Solanum tuberosum
PGSC0003DMG400027151
I
0.895
Pavir.Fb01917
Panicum virgatum
Pavir.Fb01917
I
0.895
Solyc05g053240.2
Solanum lycopersicum
Solyc05g053240.2
I
0.895
Bostr.0124s0106
Boechera stricta
Bostr.0124s0106
I
0.894
SPL4
Arabidopsis thaliana
AT1G53160
D
0.894
TCM_011483
Theobroma cacao
TCM_011483
I
0.893
AMTR_s00062p00211520
Amborella trichopoda
AMTR_s00062p00211520
I
0.892
MDP0000919693
Malus domestica
MDP0000919693
I
0.892
MDP0000919694
Malus domestica
MDP0000919694
I
0.892
Gorai.013G169800
Gossypium raimondii
Gorai.013G169800
I
0.891
PRUPE_ppa000792mg
Prunus persica
PRUPE_ppa000792mg
I
0.891
SapurV1A.0016s0070
Salix purpurea
SapurV1A.0016s0070
I
0.891
SapurV1A.0554s0130
Salix purpurea
SapurV1A.0554s0130
I
0.891
MDP0000180408
Malus domestica
MDP0000180408
I
0.891
TCM_031595
Theobroma cacao
TCM_031595
I
0.891
Bostr.20129s0096
Boechera stricta
Bostr.20129s0096
I
0.891
POPTR_0002s00440
Populus trichocarpa
POPTR_0002s00440
D
0.891
Cagra.16630s0008
Capsella grandiflora
Cagra.16630s0008
I
0.891
Thhalv10001295m.g
Eutrema salsugineum
Thhalv10001295m.g
I
0.891
POPTR_0005s28010
Populus trichocarpa
POPTR_0005s28010
I
0.891
TCM_034803
Theobroma cacao
TCM_034803
I
0.891
SELMODRAFT_437670
Selaginella moellendorffii
SELMODRAFT_437670
I
0.890
F775_27970
Aegilops tauschii
F775_27970
I
0.890
BRADI3G40240
Brachypodium distachyon
BRADI3G40240
I
0.890
TRIUR3_31982
Triticum urartu
TRIUR3_31982
I
0.890
PGSC0003DMG400022824
Solanum tuberosum
PGSC0003DMG400022824
I
0.890
MLOC_4792
Hordeum vulgare
MLOC_4792
I
0.890
Traes_7DS_AB399594E
Triticum aestivum
Traes_7DS_AB399594E
I
0.890
Traes_7AS_0F019FB93
Triticum aestivum
Traes_7AS_0F019FB93
I
0.890
SELMODRAFT_445524
Selaginella moellendorffii
SELMODRAFT_445524
I
0.890
SPL4
Arabidopsis lyrata
fgenesh2_kg.1__4389__AT1G53160.2
I
0.889
chr1.CM0122.330.nc
Lotus japonicus
chr1.CM0122.330.nc
I
0.889
GSMUA_Achr2G01820_001
Musa acuminata
GSMUA_Achr2G01820_001
I
0.889
OMERI01G39190
Oryza meridionalis
OMERI01G39190
I
0.888
OGLUM01G46420
Oryza glumaepatula
OGLUM01G46420
I
0.888
ONIVA01G48230
Oryza nivara
ONIVA01G48230
I
0.888
OPUNC01G41070
Oryza punctata
OPUNC01G41070
I
0.888
ORGLA01G0361700
Oryza glaberrima
ORGLA01G0361700
I
0.888
MLOC_52321
Hordeum vulgare
MLOC_52321
I
0.888
ORUFI01G45560
Oryza rufipogon
ORUFI01G45560
I
0.888
BGIOSGA005075
Oryza indica
BGIOSGA005075
I
0.888
Sb03g044160
Sorghum bicolor
Sb03g044160
I
0.888
LPERR01G36700
Leersia perrieri
LPERR01G36700
I
0.888
SPL1
Arabidopsis lyrata
fgenesh2_kg.4__2943__AT2G47070.1
I
0.888
Cla017596
Citrullus lanatus
Cla017596
I
0.888
Si026656m.g
Setaria italica
Si026656m.g
I
0.887
Thhalv10021617m.g
Eutrema salsugineum
Thhalv10021617m.g
I
0.887
ORGLA11G0121600
Oryza glaberrima
ORGLA11G0121600
I
0.887
Pavir.Hb01173
Panicum virgatum
Pavir.Hb01173
I
0.887
Solyc07g053810.2
Solanum lycopersicum
Solyc07g053810.2
I
0.887
GRMZM2G371033
Zea mays
GRMZM2G371033
I
0.887
Bra038101
Brassica rapa
Bra038101
I
0.887
Cucsa.192470
Cucumis sativus
Cucsa.192470
I
0.887
SPL19
Oryza sativa
OS11G0496600
I
0.887
VIT_05s0020g00700
Vitis vinifera
VIT_05s0020g00700
I
0.886
Ciclev10004227m.g
Citrus clementina
Ciclev10004227m.g
I
0.886
GLYMA17G04400
Glycine max
GLYMA17G04400
I
0.886
TCM_021482
Theobroma cacao
TCM_021482
I
0.886
Bra027265
Brassica rapa
Bra027265
I
0.886
Bo5g127310
Brassica oleracea
Bo5g127310
I
0.886
Bo2g091010
Brassica oleracea
Bo2g091010
I
0.886
SapurV1A.0072s0370
Salix purpurea
SapurV1A.0072s0370
I
0.886
GLYMA09G09790
Glycine max
GLYMA09G09790
I
0.886
Traes_5DL_C588E74B5
Triticum aestivum
Traes_5DL_C588E74B5
N
0.593