AMTR_s00106p00144050 (Amborella trichopoda)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AMTR_s00106p00144050 T322384_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.910 0.800
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN00768 SBP 147 221

Links

Other SBP family TFs
Other Amborella trichopoda TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.910
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.910
SPL8 Arabidopsis thaliana AT1G02065 D 0.910
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.910
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.910
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.910
Bo5g001290 Brassica oleracea Bo5g001290 I 0.910
Bo8g118210 Brassica oleracea Bo8g118210 I 0.910
Bra033221 Brassica rapa Bra033221 I 0.910
Bra032662 Brassica rapa Bra032662 I 0.910
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.909
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.909
30174.m008803 Ricinus communis 30174.m008803 I 0.905
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.905
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.905
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.905
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.905
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.905
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.905
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.905
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.905
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.905
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.905
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.905
PK25779.1 Cannabis sativa PK25779.1 I 0.905
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.905
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.905
Ca_18942 Cicer arietinum Ca_18942 I 0.905
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.905
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.905
TCM_005622 Theobroma cacao TCM_005622 I 0.905
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.905
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.905
MDP0000803116 Malus domestica MDP0000803116 I 0.904
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.902
mgf016085m Mimulus guttatus mgf016085m I 0.902
Cla006776 Citrullus lanatus Cla006776 I 0.901
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.900
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.896
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.894
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.892
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.889
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.889