SPL10 (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT1G27370 T322389_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00		 Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.967 0.933
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.967 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01084_2.00 SBP 52 126

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G27370.1 SBP 176 250
AT1G27370.2 SBP 176 250
AT1G27370.3 SBP 176 250
AT1G27370.4 SBP 176 250
AT1G27370.5 SBP 176 250
AT1G27370.6 SBP 176 250
AT1G27370.7 SBP 176 250

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g051970 Brassica oleracea Bo5g051970 I 0.987
Bra032823 Brassica rapa Bra032823 I 0.987
Bo7g049940 Brassica oleracea Bo7g049940 I 0.982
Bra030041 Brassica rapa Bra030041 I 0.982
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.981
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.981
Bra030040 Brassica rapa Bra030040 I 0.980
Bo7g049950 Brassica oleracea Bo7g049950 I 0.979
Bo5g051980 Brassica oleracea Bo5g051980 I 0.979
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.977
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.977
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.977
Bra010949 Brassica rapa Bra010949 I 0.977
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.975
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.970
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.970
Ca_08506 Cicer arietinum Ca_08506 I 0.968
SPL11 Arabidopsis thaliana AT1G27360 D 0.967
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.963
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.960
Bra032822 Brassica rapa Bra032822 I 0.959
Bo3g141480 Brassica oleracea Bo3g141480 I 0.958
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.945
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.943
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.931
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.928
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.916
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.912
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.912
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.912
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.912
29929.m004641 Ricinus communis 29929.m004641 I 0.908
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.907
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.902
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.900
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.897
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.890
Ca_11356 Cicer arietinum Ca_11356 I 0.889
mgf019346m Mimulus guttatus mgf019346m I 0.889