CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
SPL10
(
Arabidopsis thaliana
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
AT1G27370
T322389_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.967
0.933
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.967
0.933
For this family, TFs with SR scores >
0.885
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01084_2.00
SBP
52
126
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G27370.1
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.2
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.3
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.4
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.5
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.6
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.7
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
Links
Other
SBP
family TFs
Other
Arabidopsis thaliana
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy