CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPL10
(
Arabidopsis thaliana
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
AT1G27370
T322389_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
member of the SPL (squamosa-promoter binding protein-like) gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. In conjunction with SPL10 and SPL11, SPL2 redundantly controls proper development of lateral organs in association with shoot maturation in the reproductive phase.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.967
0.933
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.967
0.933
For this family, TFs with SR scores >
0.885
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01084_2.00
SBP
52
126
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G27370.1
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.2
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.3
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.4
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.5
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.6
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
AT1G27370.7
SBP
176
250
CQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKP
Links
Other
SBP
family TFs
Other
Arabidopsis thaliana
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy