SPL9 (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT2G42200 T322394_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expression is regulated by MIR156b. SPL activity nonautonomously inhibits initiation of new leaves at the shoot apical meristem.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN

NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
(Direct) (Direct)
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH

DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
(Direct) (Direct)
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA

TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.885 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01308_2.00 SBP 52 126

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G42200.1 SBP 74 148

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.976
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.976
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.976
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.974
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.968
Bra004674 Brassica rapa Bra004674 I 0.966
Bo4g015800 Brassica oleracea Bo4g015800 I 0.966
Bra016891 Brassica rapa Bra016891 I 0.961
Bo4g191350 Brassica oleracea Bo4g191350 I 0.961
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.907
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.907
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.893
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.893
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.890
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.890
Pm007035 Prunus mume Pm007035 I 0.890
Pm002693 Prunus mume Pm002693 I 0.889
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.889
MDP0000297978 Malus domestica MDP0000297978 I 0.889
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.889
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.889
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.889