SPL7 (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT5G18830 T322399_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the Squamosa Binding Protein family of transcriptional regulators. SPL7 is expressed highly in roots and appears to play a role in copper homeostasis. Mutants are hypersensitive to copper deficient conditions and display a retarded growth phenotype. SPL7 binds to the promoter of the copper responsive miRNAs miR398b and miR389c.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL7
M00888_2.00
Arabidopsis thaliana
GGRGDAAAGG

CCTTTHCYCC
PBM
Franco-Zorrilla et al.(2014)
SPL7
(Direct) (Direct)
SPL7
M02476_2.00
Arabidopsis thaliana
DGTACKDNN

NNHMGTACH
PBM
Weirauch et al.(2014)
pTH7288
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.885 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00888_2.00 SBP 138 212
M02476_2.00 SBP 52 126

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G18830.1 SBP 138 212
AT5G18830.2 SBP 138 212
AT5G18830.3 SBP 138 212

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_04392 Aegilops tauschii F775_04392 I 0.967
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.973
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.940
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.983
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.980
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.953
Bo9g154530 Brassica oleracea Bo9g154530 I 0.976
Bo00629s160 Brassica oleracea Bo00629s160 I 0.962
Bra002188 Brassica rapa Bra002188 I 0.976
Bra023695 Brassica rapa Bra023695 I 0.962
PK29723.1 Cannabis sativa PK29723.1 I 0.953
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.980
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.980
Ca_00550 Cicer arietinum Ca_00550 I 0.946
Cla022022 Citrullus lanatus Cla022022 I 0.973
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.975
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.975
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.973
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.970
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.983
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.952
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.968
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.957
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.948
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.971
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.965
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.965
MDP0000271587 Malus domestica MDP0000271587 I 0.946
MDP0000195461 Malus domestica MDP0000195461 I 0.931
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.978
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.978
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.955
MTR_2g020620 Medicago truncatula MTR_2g020620 I 0.961
mgf004695m Mimulus guttatus mgf004695m I 0.962
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.976
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.960
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.975
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.973
OBART05G16150 Oryza barthii OBART05G16150 I 0.971
OB05G24080 Oryza brachyantha OB05G24080 I 0.971
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.971
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.971
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.971
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.969
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.971
SPL9 Oryza sativa OS05G0408200 I 0.971
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.972
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.971
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.969
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.952
Pm008092 Prunus mume Pm008092 I 0.942
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.942
29726.m003959 Ricinus communis 29726.m003959 I 0.974
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.939
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.952
SELMODRAFT_49860 Selaginella moellendorffii SELMODRAFT_49860 I 0.890
SELMODRAFT_49859 Selaginella moellendorffii SELMODRAFT_49859 I 0.890
Si021754m.g Setaria italica Si021754m.g I 0.973
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.978
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.978
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.971
TCM_021101 Theobroma cacao TCM_021101 I 0.966
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.972
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.979
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.971