SPL13A (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT5G50670 T322402_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.921 0.667
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.911 0.627
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.909 0.587
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.909 0.587
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.909 0.587
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.907 0.653
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.907 0.653
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.907 0.653
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.907 0.640
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.907 0.640
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.907 0.640
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.906 0.653
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.899 0.653
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.899 0.653
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.898 0.600
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.896 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G50670.1 SBP 101 175
AT5G50670.2 SBP 101 175

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACLA_015750 Aspergillus clavatus CADACLAG00000777 N 0.000
ANIA_06828 Aspergillus nidulans CADANIAG00007625 N 0.000
ARB_03383 Arthroderma benhamiae ARB_03383 N 0.000
BDDG_03982 Blastomyces dermatitidis BDDG_03982 N 0.000
CADAFLAG00009066 Aspergillus flavus CADAFLAG00009066 N 0.000
CADAORAG00011529 Aspergillus oryzae CADAORAG00011529 N 0.000
CIMG_09294 Coccidioides immitis CIMG_09294 N 0.000
CPC735_016860 Coccidioides posadasii CPC735_016860 N 0.000
e_gw1.00710.16.1 Aspergillus carbonarius e_gw1.00710.16.1 N 0.000
H101_05712 Trichophyton interdigitale H101_05712 N 0.000
H102_00136 Trichophyton rubrum H102_00136 N 0.000
H105_00127 Trichophyton soudanense H105_00127 N 0.000
HCBG_01633 Histoplasma capsulatum HCBG_01633 N 0.000
MCYG_05083 Arthroderma otae MCYG_05083 N 0.000
MCYG_05083 Microsporum canis MCYG_05083 N 0.000
MGYG_07639 Microsporum gypseum MGYG_07639 N 0.000
NFIA_074180 Neosartorya fischeri CADNFIAG00008303 N 0.000
PAAG_02538 Paracoccidioides sp lutzii PAAG_02538 N 0.000
PABG_05885 Paracoccidioides brasiliensis PABG_05885 N 0.000
PMAA_033550 Penicillium marneffei PMAA_033550 N 0.000
PMAA_033550 Talaromyces marneffei PMAA_033550 N 0.000
TEQG_06502 Trichophyton equinum TEQG_06502 N 0.000
TESG_04055 Trichophyton tonsurans TESG_04055 N 0.000
TRV_08066 Trichophyton verrucosum TRV_08066 N 0.000
TSTA_064070 Talaromyces stipitatus TSTA_064070 N 0.000
UREG_05003 Uncinocarpus reesii UREG_05003 N 0.000