SPL13A (Arabidopsis thaliana)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AT5G50670 T322402_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.921 0.667
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.911 0.627
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.909 0.587
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.909 0.587
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.909 0.587
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.907 0.653
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.907 0.653
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.907 0.653
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.907 0.640
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.907 0.640
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.907 0.640
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.906 0.653
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.899 0.653
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.899 0.653
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.898 0.600
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.896 0.693
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G50670.1 SBP 101 175
AT5G50670.2 SBP 101 175

Links

Other SBP family TFs
Other Arabidopsis thaliana TFs

333 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000010559 Ailuropoda melanoleuca ENSAMEG00000010559 I 0.000
ENSAPLG00000008769 Anas platyrhynchos ENSAPLG00000008769 I 0.000
Afo_R003471 Aptenodytes forsteri Afo_R003471 I 0.000
BGLB005801 Biomphalaria glabrata BGLB005801 I 0.000
ENSCJAG00000001029 Callithrix jacchus ENSCJAG00000001029 I 0.000
Aan_R001040 Calypte anna Aan_R001040 I 0.000
ENSCAFG00000002448 Canis familiaris ENSCAFG00000002448 I 0.000
CapteG145851 Capitella teleta CapteG145851 I 0.000
ENSCPOG00000005481 Cavia porcellus ENSCPOG00000005481 I 0.000
ENSCSAG00000013508 Chlorocebus sabaeus ENSCSAG00000013508 I 0.000
CGI_10012885 Crassostrea gigas CGI_10012885 I 0.000
ENSDNOG00000003198 Dasypus novemcinctus ENSDNOG00000003198 I 0.000
Ahr Dipodomys ordii ENSDORG00000007750 I 0.000
ENSETEG00000019660 Echinops telfairi ENSETEG00000019660 I 0.000
ENSGALG00000010836 Gallus gallus ENSGALG00000010836 I 0.000
ahr1b Gasterosteus aculeatus ENSGACG00000015615 I 0.000
Gfo_R002789 Geospiza fortis Gfo_R002789 I 0.000
ENSGGOG00000011367 Gorilla gorilla ENSGGOG00000011367 I 0.000
AHR Homo sapiens ENSG00000106546 D 0.000
XP_002161735.1 Hydra magnipapillata XP_002161735.1 I 0.000
ENSSTOG00000003086 Ictidomys tridecemlineatus ENSSTOG00000003086 I 0.000
ENSLACG00000002803 Latimeria chalumnae ENSLACG00000002803 I 0.000
LotgiG117861 Lottia gigantea LotgiG117861 I 0.000
ENSLAFG00000015328 Loxodonta africana ENSLAFG00000015328 I 0.000
ENSMMUG00000012203 Macaca mulatta ENSMMUG00000012203 I 0.000
ENSMGAG00000010174 Meleagris gallopavo ENSMGAG00000010174 I 0.000
ENSMODG00000001528 Monodelphis domestica ENSMODG00000001528 I 0.000
ENSMPUG00000013964 Mustela putorius furo ENSMPUG00000013964 I 0.000
Ahr Mus musculus ENSMUSG00000019256 D 0.000
Myotis_brandtii_AHR_10031750 Myotis brandtii Myotis_brandtii_AHR_10031750 I 0.000
ENSMLUG00000000097 Myotis lucifugus ENSMLUG00000000097 I 0.000
ENSOPRG00000010358 Ochotona princeps ENSOPRG00000010358 I 0.000
AHR Oryctolagus cuniculus ENSOCUG00000003877 I 0.000
ENSOGAG00000012656 Otolemur garnettii ENSOGAG00000012656 I 0.000
ENSOARG00000009234 Ovis aries ENSOARG00000009234 I 0.000
AHR Pan troglodytes ENSPTRG00000018955 I 0.000
ENSPANG00000002444 Papio anubis ENSPANG00000002444 I 0.000
ENSPSIG00000010051 Pelodiscus sinensis ENSPSIG00000010051 I 0.000
ENSPPYG00000017758 Pongo abelii ENSPPYG00000017758 I 0.000
ENSPCAG00000006894 Procavia capensis ENSPCAG00000006894 I 0.000
PXEA_0000742401 Protopolystoma xenopodis PXEA_0000742401 I 0.000
ENSPVAG00000002167 Pteropus vampyrus ENSPVAG00000002167 I 0.000
Ahr Rattus norvegicus ENSRNOG00000004342 I 0.000
ENSSHAG00000001563 Sarcophilus harrisii ENSSHAG00000001563 I 0.000
SMU15013078 Schmidtea mediterranea SMU15013078 I 0.000
SMU15033026 Schmidtea mediterranea SMU15033026 I 0.000
ENSSARG00000001961 Sorex araneus ENSSARG00000001961 I 0.000
SPU_005022 Strongylocentrotus purpuratus SPU_005022 I 0.000
ENSSSCG00000015364 Sus scrofa ENSSSCG00000015364 I 0.000
AHR Sus scrofa ENSSSCG00000030484 I 0.000
ENSTGUG00000002585 Taeniopygia guttata ENSTGUG00000002585 I 0.000
ENSTSYG00000010830 Tarsius syrichta ENSTSYG00000010830 I 0.000
ENSTBEG00000007210 Tupaia belangeri ENSTBEG00000007210 I 0.000
ENSTTRG00000006913 Tursiops truncatus ENSTTRG00000006913 I 0.000
Tal_R011867 Tyto alba Tal_R011867 I 0.000
ENSVPAG00000008443 Vicugna pacos ENSVPAG00000008443 I 0.000