CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Bo3g141480
(
Brassica oleracea
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Bo3g141480
T322432_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.958
0.880
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.945
0.867
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.945
0.867
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g141480.1
SBP
136
210
CQIDGCELDLSSAKDYHRKHRVCDNHSKSPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLTHHNARRRKL
Links
Other
SBP
family TFs
Other
Brassica oleracea
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy