Bo4g015800 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo4g015800 T322434_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN

NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.966 0.960
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH

DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.966 0.960
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA

TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.966 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g015800.1 SBP 73 147

Links

Other SBP family TFs
Other Brassica oleracea TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra004674 Brassica rapa Bra004674 I 0.983
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.981
Bra016891 Brassica rapa Bra016891 I 0.979
Bo4g191350 Brassica oleracea Bo4g191350 I 0.979
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.973
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.973
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.973
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.973
SPL9 Arabidopsis thaliana AT2G42200 D 0.966
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.932
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.926
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.922
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.922
Si030195m.g Setaria italica Si030195m.g I 0.922
TCM_024873 Theobroma cacao TCM_024873 I 0.914
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.914
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.914
29269.m000250 Ricinus communis 29269.m000250 I 0.914
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.911
PK18312.1 Cannabis sativa PK18312.1 I 0.911
MDP0000297978 Malus domestica MDP0000297978 I 0.911
Pm002693 Prunus mume Pm002693 I 0.911
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.911
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.909
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.908
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.907
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.907
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.905
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.905
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.903
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.903
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.902
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.902
F775_10743 Aegilops tauschii F775_10743 I 0.900
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.896
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.896
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.896
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.896
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.896
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.896
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.896
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.896
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.896
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.896
OBART09G14800 Oryza barthii OBART09G14800 I 0.896
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.896
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.895
Bra004363 Brassica rapa Bra004363 N 0.892
Bo6g108620 Brassica oleracea Bo6g108620 N 0.891
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.890
SPL14 Oryza sativa OS08G0509600 I 0.890
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.890
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.890
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.890
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.890
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.889
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.889
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.889
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.888