Bo4g191350 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo4g191350 T322437_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.961 0.907
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.961 0.907
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.961 0.907
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g191350.1 SBP 71 145

Links

Other SBP family TFs
Other Brassica oleracea TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra016891 Brassica rapa Bra016891 I 0.982
Bo4g015800 Brassica oleracea Bo4g015800 I 0.979
Bra004674 Brassica rapa Bra004674 I 0.979
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.978
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.968
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.968
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.968
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.968
SPL9 Arabidopsis thaliana AT2G42200 D 0.961
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.926
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.926
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.926
Si030195m.g Setaria italica Si030195m.g I 0.926
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.925
TCM_024873 Theobroma cacao TCM_024873 I 0.913
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.913
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.913
29269.m000250 Ricinus communis 29269.m000250 I 0.913
PK18312.1 Cannabis sativa PK18312.1 I 0.909
MDP0000297978 Malus domestica MDP0000297978 I 0.909
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.909
Pm002693 Prunus mume Pm002693 I 0.909
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.909
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.908
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.906
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.906
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.905
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.905
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.905
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.904
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.901
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.901
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.901
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.901
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.901
OBART09G14800 Oryza barthii OBART09G14800 I 0.901
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.901
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.901
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.901
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.901
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.900
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.900
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.900
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.898
F775_10743 Aegilops tauschii F775_10743 I 0.898
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.894
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.894
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.892
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.892
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.892
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.892
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.892
SPL14 Oryza sativa OS08G0509600 I 0.892
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.891
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.889
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.887
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.887
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.887