Bo5g051970 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo5g051970 T322440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.987 0.920
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.969 0.893
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.969 0.893
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g051970.1 SBP 163 237

Links

Other SBP family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004641 Ricinus communis 29929.m004641 I 0.893
Bo3g141480 Brassica oleracea Bo3g141480 I 0.965
Bo5g051980 Brassica oleracea Bo5g051980 I 0.984
Bo7g049940 Brassica oleracea Bo7g049940 I 0.984
Bo7g049950 Brassica oleracea Bo7g049950 I 0.980
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.980
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.978
Bra010949 Brassica rapa Bra010949 I 0.981
Bra030040 Brassica rapa Bra030040 I 0.983
Bra030041 Brassica rapa Bra030041 I 0.984
Bra032822 Brassica rapa Bra032822 I 0.969
Bra032823 Brassica rapa Bra032823 I 0.990
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.890
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.974
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.980
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.980
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.974
Ca_08506 Cicer arietinum Ca_08506 I 0.962
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.934
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.893
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.920
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.890
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.935
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.916
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.920
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.903
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.903
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.903
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.903
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.976
SPL10 Arabidopsis thaliana AT1G27370 D 0.987
SPL11 Arabidopsis thaliana AT1G27360 D 0.969
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.965
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.976
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.965
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.903