Bo7g049940 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo7g049940 T322448_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.982 0.893
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.974 0.880
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.974 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g049940.1 SBP 153 227

Links

Other SBP family TFs
Other Brassica oleracea TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra030041 Brassica rapa Bra030041 I 0.989
Bra032823 Brassica rapa Bra032823 I 0.985
Bra030040 Brassica rapa Bra030040 I 0.985
Bo5g051980 Brassica oleracea Bo5g051980 I 0.985
Bo5g051970 Brassica oleracea Bo5g051970 I 0.984
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.983
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.983
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.983
Bra010949 Brassica rapa Bra010949 I 0.983
Bo7g049950 Brassica oleracea Bo7g049950 I 0.983
SPL10 Arabidopsis thaliana AT1G27370 D 0.982
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.981
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.979
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.979
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.978
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.978
SPL11 Arabidopsis thaliana AT1G27360 D 0.974
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.970
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.970
Bo3g141480 Brassica oleracea Bo3g141480 I 0.969
Bra032822 Brassica rapa Bra032822 I 0.950
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.950
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.949
Ca_08506 Cicer arietinum Ca_08506 I 0.943
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.928
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.924
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.920
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.920
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.920
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.920
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.916
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.900
29929.m004641 Ricinus communis 29929.m004641 I 0.900
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.893
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.891
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.886