Bo7g049950 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo7g049950 T322449_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.979 0.933
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.977 0.933
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.977 0.933
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g049950.1 SBP 167 241

Links

Other SBP family TFs
Other Brassica oleracea TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL11 Arabidopsis thaliana AT1G27360 D 0.977
SPL10 Arabidopsis thaliana AT1G27370 D 0.979
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.981
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.978
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.975
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.981
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.981
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.975
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.931
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.889
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.930
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.924
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.894
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.894
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.979
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.966
mgf019346m Mimulus guttatus mgf019346m I 0.922
29929.m004641 Ricinus communis 29929.m004641 I 0.936
Ca_08506 Cicer arietinum Ca_08506 I 0.934
Bo3g141480 Brassica oleracea Bo3g141480 I 0.977
Bo5g051970 Brassica oleracea Bo5g051970 I 0.980
Bo5g051980 Brassica oleracea Bo5g051980 I 0.989
Bo7g049940 Brassica oleracea Bo7g049940 I 0.983
Bra010949 Brassica rapa Bra010949 I 0.988
Bra030040 Brassica rapa Bra030040 I 0.990
Bra030041 Brassica rapa Bra030041 I 0.983
Bra032822 Brassica rapa Bra032822 I 0.937
Bra032823 Brassica rapa Bra032823 I 0.981
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.979
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.894
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.894
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.974
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.899
PK16953.1 Cannabis sativa PK16953.1 N 0.886