Bra010949 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra010949 T322462_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.977 0.893
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.970 0.880
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.970 0.880
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra010949.1-P SBP 152 226

Links

Other SBP family TFs
Other Brassica rapa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.966
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.976
SPL11 Arabidopsis thaliana AT1G27360 D 0.970
SPL10 Arabidopsis thaliana AT1G27370 D 0.977
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.979
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.981
Bo7g049950 Brassica oleracea Bo7g049950 I 0.988
Bo3g141480 Brassica oleracea Bo3g141480 I 0.984
Bo5g051970 Brassica oleracea Bo5g051970 I 0.981
Bo7g049940 Brassica oleracea Bo7g049940 I 0.983
Bo5g051980 Brassica oleracea Bo5g051980 I 0.989
Bra032822 Brassica rapa Bra032822 I 0.941
Bra032823 Brassica rapa Bra032823 I 0.981
Bra030041 Brassica rapa Bra030041 I 0.983
Bra030040 Brassica rapa Bra030040 I 0.990
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.981
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.975
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.981
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.975
Ca_08506 Cicer arietinum Ca_08506 I 0.930
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.923
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.976
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.966
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.925
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.919
mgf019346m Mimulus guttatus mgf019346m I 0.919
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.888
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.888
29929.m004641 Ricinus communis 29929.m004641 I 0.929
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.888
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.888
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.888