Bra016891 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra016891 T322465_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL9
M01308_2.00 		Arabidopsis thaliana
NGTACKDNN
NNHMGTACN		 PBM
Lambert et al.(2019)
pTH11560 		0.961 0.920
SPL9
M07257_2.00 		Arabidopsis thaliana
NNYGTACKKHH
DDMMGTACRNN		 Dap-seq
OMalley et al.(2016)
SPL9_col_a 		0.961 0.920
SPL9
M07258_2.00 		Arabidopsis thaliana
NDNTGTACGGA
TCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL9_colamp_a 		0.961 0.920
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016891.1-P SBP 71 145

Links

Other SBP family TFs
Other Brassica rapa TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g191350 Brassica oleracea Bo4g191350 I 0.982
Bra004674 Brassica rapa Bra004674 I 0.979
Bo4g015800 Brassica oleracea Bo4g015800 I 0.979
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.978
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.968
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.968
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.968
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.968
SPL9 Arabidopsis thaliana AT2G42200 D 0.961
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.926
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.926
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.926
Si030195m.g Setaria italica Si030195m.g I 0.926
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.925
TCM_024873 Theobroma cacao TCM_024873 I 0.913
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.913
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.913
29269.m000250 Ricinus communis 29269.m000250 I 0.913
PK18312.1 Cannabis sativa PK18312.1 I 0.909
MDP0000297978 Malus domestica MDP0000297978 I 0.909
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.909
Pm002693 Prunus mume Pm002693 I 0.909
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.909
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.908
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.906
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.906
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.905
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.905
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.905
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.904
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.901
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.901
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.901
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.901
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.901
OBART09G14800 Oryza barthii OBART09G14800 I 0.901
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.901
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.901
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.901
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.901
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.900
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.900
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.900
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.898
F775_10743 Aegilops tauschii F775_10743 I 0.898
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.894
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.894
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.892
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.892
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.892
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.892
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.892
SPL14 Oryza sativa OS08G0509600 I 0.892
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.891
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.889
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.887
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.887
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.887