Bra021880 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra021880 T322467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.964 0.840
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.964 0.840
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.964 0.840
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.902 0.707
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.902 0.707
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.902 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra021880.1-P SBP 64 138

Links

Other SBP family TFs
Other Brassica rapa TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g027460 Brassica oleracea Bo3g027460 I 0.970
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.970
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.970
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.965
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.965
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.965
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.965
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.964
SPL3 Arabidopsis thaliana AT2G33810 D 0.964
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.964
Bra005470 Brassica rapa Bra005470 I 0.962
Bo4g042390 Brassica oleracea Bo4g042390 I 0.962
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.961
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.960
Bra022954 Brassica rapa Bra022954 I 0.958
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.956
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.956
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.954
TCM_029832 Theobroma cacao TCM_029832 I 0.954
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.952
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.952
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.951
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.949
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.943
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.941
PK26639.1 Cannabis sativa PK26639.1 I 0.940
MDP0000156994 Malus domestica MDP0000156994 I 0.933
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.933
MDP0000861601 Malus domestica MDP0000861601 I 0.933
Pm010075 Prunus mume Pm010075 I 0.933
Cla009788 Citrullus lanatus Cla009788 I 0.930
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.930
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.927
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.927
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.926
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.925
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.925
Cla021411 Citrullus lanatus Cla021411 I 0.925
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.924
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.924
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.924
Pm011381 Prunus mume Pm011381 I 0.924
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.923
mgf016414m Mimulus guttatus mgf016414m I 0.923
OB04G27960 Oryza brachyantha OB04G27960 I 0.923
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.922
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.922
OBART04G20940 Oryza barthii OBART04G20940 I 0.922
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.922
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.922
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.922
SPL7 Oryza sativa OS04G0551500 I 0.922
Cla023735 Citrullus lanatus Cla023735 I 0.922
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.922
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.922
Pm014154 Prunus mume Pm014154 I 0.921
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.921
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.920
Si032170m.g Setaria italica Si032170m.g I 0.920
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.920
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.918
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.918
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.918
Ca_16243 Cicer arietinum Ca_16243 I 0.918
MDP0000158607 Malus domestica MDP0000158607 I 0.918
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.918
Bra038324 Brassica rapa Bra038324 I 0.917
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.916
mgf017351m Mimulus guttatus mgf017351m I 0.916
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.915
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.915
Bo2g062840 Brassica oleracea Bo2g062840 I 0.915
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.914
SPL6 Arabidopsis thaliana AT1G69170 I 0.914
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.912
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.912
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.912
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.912
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.911
Pm030597 Prunus mume Pm030597 I 0.910
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.910
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.909
MDP0000171877 Malus domestica MDP0000171877 I 0.908
MDP0000246046 Malus domestica MDP0000246046 I 0.908
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.908
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.908
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.907
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.905
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.904
Pm008474 Prunus mume Pm008474 I 0.904
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.904
Pm008475 Prunus mume Pm008475 I 0.904
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.904
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.903
Cla020006 Citrullus lanatus Cla020006 I 0.902
Ca_10879 Cicer arietinum Ca_10879 I 0.902
SPL5 Arabidopsis thaliana AT3G15270 D 0.902
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.902
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.902
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.902
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.901
29983.m003158 Ricinus communis 29983.m003158 I 0.900
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.900
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.899
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.899
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.898
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.897
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.897
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.897
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.897
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.896
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.896
MDP0000589558 Malus domestica MDP0000589558 I 0.896
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.895
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.895
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.895
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.895
Ca_24655 Cicer arietinum Ca_24655 I 0.895
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.893
TCM_005620 Theobroma cacao TCM_005620 I 0.893
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.893
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.893
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.893
30174.m008805 Ricinus communis 30174.m008805 I 0.893
MDP0000865739 Malus domestica MDP0000865739 I 0.893
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.893
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.892
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.891
30190.m011329 Ricinus communis 30190.m011329 I 0.890
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.888
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.888
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.886
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.886
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.886
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.885