CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra021880
(
Brassica rapa
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Bra021880
T322467_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA
TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.964
0.840
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.964
0.840
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.964
0.840
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN
NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.902
0.707
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.902
0.707
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.902
0.707
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra021880.1-P
SBP
64
138
CQVERCTADMSRAKQYHKRHRVCEFHAKAPLVRISGLYQRFCQQCSRFHELGEFDDTKRSCRRRLAGHNERRRRN
Links
Other
SBP
family TFs
Other
Brassica rapa
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy