Bra030041 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra030041 T322475_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.982 0.907
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.974 0.893
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.974 0.893
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030041.1-P SBP 156 230

Links

Other SBP family TFs
Other Brassica rapa TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g049940 Brassica oleracea Bo7g049940 I 0.989
Bra030040 Brassica rapa Bra030040 I 0.986
Bo5g051980 Brassica oleracea Bo5g051980 I 0.985
Bra032823 Brassica rapa Bra032823 I 0.985
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.984
Bo5g051970 Brassica oleracea Bo5g051970 I 0.984
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.984
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.984
Bo7g049950 Brassica oleracea Bo7g049950 I 0.983
Bra010949 Brassica rapa Bra010949 I 0.983
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.982
SPL10 Arabidopsis thaliana AT1G27370 D 0.982
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.980
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.980
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.979
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.979
SPL11 Arabidopsis thaliana AT1G27360 D 0.974
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.971
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.971
Bo3g141480 Brassica oleracea Bo3g141480 I 0.969
Bra032822 Brassica rapa Bra032822 I 0.952
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.951
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.950
Ca_08506 Cicer arietinum Ca_08506 I 0.945
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.930
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.926
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.922
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.922
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.922
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.922
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.918
29929.m004641 Ricinus communis 29929.m004641 I 0.903
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.903
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.896
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.894
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.886
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.886