Bra032822 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra032822 T322477_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.959 0.893
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.906 0.867
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.906 0.867
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032822.1-P SBP 164 238

Links

Other SBP family TFs
Other Brassica rapa TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL11 Arabidopsis thaliana AT1G27360 D 0.906
SPL10 Arabidopsis thaliana AT1G27370 D 0.959
Ca_08506 Cicer arietinum Ca_08506 I 0.893
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.945
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.939
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.929
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.945
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.945
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.929
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.925
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.894
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.925
Bra032823 Brassica rapa Bra032823 I 0.968
Bo3g141480 Brassica oleracea Bo3g141480 I 0.895
Bo5g051970 Brassica oleracea Bo5g051970 I 0.969
Bo5g051980 Brassica oleracea Bo5g051980 I 0.949
Bo7g049940 Brassica oleracea Bo7g049940 I 0.950
Bo7g049950 Brassica oleracea Bo7g049950 I 0.937
Bra010949 Brassica rapa Bra010949 I 0.941
Bra030040 Brassica rapa Bra030040 I 0.947
Bra030041 Brassica rapa Bra030041 I 0.952
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.895