CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra038324
(
Brassica rapa
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Bra038324
T322482_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.905
0.773
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN
NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.898
0.680
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.898
0.680
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.898
0.680
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra038324.1-P
SBP
90
164
CQVYGCNMDLSFSKDYHKRHRVCEAHSKSSVVIVSGVEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Brassica rapa
TFs
256 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy