SPL10 (Arabidopsis lyrata)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 fgenesh2_kg.1__2893__AT1G27370.2 T322550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL11
M02471_2.00
Arabidopsis thaliana
NNNHGTACGGWN

NWCCGTACDNNN
PBM
Weirauch et al.(2014)
pTH9392
0.982 0.960
SPL11
M07254_2.00
Arabidopsis thaliana
HTGTACTDDHH

DDHHAGTACAD
Dap-seq
OMalley et al.(2016)
SPL11_col100_a
0.982 0.960
SPL10
M01084_2.00
Arabidopsis thaliana
NNGTACGRHN

NDYCGTACNN
PBM
Sullivan et al.(2014)
pTH9749
0.981 0.960
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2893__AT1G27370.2 SBP 176 250

Links

Other SBP family TFs
Other Arabidopsis lyrata TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004641 Ricinus communis 29929.m004641 I 0.913
Bo3g141480 Brassica oleracea Bo3g141480 I 0.956
Bo5g051970 Brassica oleracea Bo5g051970 I 0.976
Bo5g051980 Brassica oleracea Bo5g051980 I 0.979
Bo7g049940 Brassica oleracea Bo7g049940 I 0.979
Bo7g049950 Brassica oleracea Bo7g049950 I 0.979
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.987
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.985
Bra010949 Brassica rapa Bra010949 I 0.976
Bra030040 Brassica rapa Bra030040 I 0.980
Bra030041 Brassica rapa Bra030041 I 0.980
Bra032822 Brassica rapa Bra032822 I 0.925
Bra032823 Brassica rapa Bra032823 I 0.977
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.888
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.983
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.987
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.987
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.983
Ca_08506 Cicer arietinum Ca_08506 I 0.941
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.941
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.904
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.937
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.926
mgf019346m Mimulus guttatus mgf019346m I 0.895
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.888
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.909
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.909
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.911
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.909
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.909
SPL10 Arabidopsis thaliana AT1G27370 D 0.981
SPL11 Arabidopsis thaliana AT1G27360 D 0.982
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.980
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.990
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.977
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.913