CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA02G30670
(
Glycine max
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
GLYMA02G30670
T322561_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.915
0.680
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH
DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.911
0.773
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.906
0.707
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.906
0.707
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.906
0.707
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA02G30670.2
SBP
75
149
CQVAGCKVDLSGAKAYYSRHKVCAMHSKSPTVTVAGLEQRFCQQCSRFHLLSEFDQGKRSCRKRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Glycine max
TFs
235 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy