GRMZM2G106798 (Zea mays)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GRMZM2G106798 T322611_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.909 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G106798_P01 SBP 76 150
GRMZM2G106798_P02 SBP 76 150
GRMZM2G106798_P03 SBP 76 150

Links

Other SBP family TFs
Other Zea mays TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SPL13A Arabidopsis thaliana AT5G50670 D 0.909
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.943
Pm016138 Prunus mume Pm016138 I 0.892
Pm024528 Prunus mume Pm024528 I 0.910
Pm025028 Prunus mume Pm025028 I 0.905
29929.m004627 Ricinus communis 29929.m004627 I 0.915
30147.m014478 Ricinus communis 30147.m014478 I 0.916
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.914
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.915
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.915
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.920
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.901
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.910
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.891
mgf003797m Mimulus guttatus mgf003797m I 0.886
mgf010913m Mimulus guttatus mgf010913m I 0.886
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.922
Cla019579 Citrullus lanatus Cla019579 I 0.893
Cla004156 Citrullus lanatus Cla004156 I 0.920
Cla002666 Citrullus lanatus Cla002666 I 0.910
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.941
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.962
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.912
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.912
Si001804m.g Setaria italica Si001804m.g I 0.910
Si026656m.g Setaria italica Si026656m.g I 0.951
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.895
TCM_008671 Theobroma cacao TCM_008671 I 0.922
TCM_011483 Theobroma cacao TCM_011483 I 0.902
TCM_014668 Theobroma cacao TCM_014668 I 0.913
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.922
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.907
Ca_01426 Cicer arietinum Ca_01426 I 0.903
Ca_05711 Cicer arietinum Ca_05711 I 0.907
Ca_24733 Cicer arietinum Ca_24733 I 0.910
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.911
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.909
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.909
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.927
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.911
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.914
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.910
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.951
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.910
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.904
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.920
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.902
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.899
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.912
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.911
PK02140.1 Cannabis sativa PK02140.1 I 0.905
PK19500.1 Cannabis sativa PK19500.1 I 0.926
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.893
MDP0000176265 Malus domestica MDP0000176265 I 0.929
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.913
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.933
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.927
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.911
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.914
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.908
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.894
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.916
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.913
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.907
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.917
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.908
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.917
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.931
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.908
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.915
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.922
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.917
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.910
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.905
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.943
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.950
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.946
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.925
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.931
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.923
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.927
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.930
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.952
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.948
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.931
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.951
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.927
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.936
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.941
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.901
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.894
SPL13A Arabidopsis thaliana AT5G50570 I 0.909
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.939
Bo3g024180 Brassica oleracea Bo3g024180 I 0.909
Bo6g031220 Brassica oleracea Bo6g031220 I 0.904
Bo9g097630 Brassica oleracea Bo9g097630 I 0.911
Bra022766 Brassica rapa Bra022766 I 0.906
Bra039656 Brassica rapa Bra039656 I 0.904
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.935
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.931
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.943
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.903
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.906
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.903
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.901
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.918
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.896
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.933
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.908
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.939
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.925
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.939
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.916
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.942
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.939
OS01G0922600 Oryza sativa OS01G0922600 I 0.926
SPL16 Oryza sativa OS08G0531600 I 0.942
SPL18 Oryza sativa OS09G0507100 I 0.905
SPL19 Oryza sativa OS11G0496600 I 0.942
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.895
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.912
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.900
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.910
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.911
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.905
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.937
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.906
OBART09G15750 Oryza barthii OBART09G15750 I 0.905
OBART01G42150 Oryza barthii OBART01G42150 I 0.920
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.907
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.903
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.896
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.943
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.917
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.939
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.942
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.942
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.905
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.928
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.939
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.939
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.923
PK14243.1 Cannabis sativa PK14243.1 N 0.911
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.886
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.914
Si013747m.g Setaria italica Si013747m.g N 0.914
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.917
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.917
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.917
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.914