GRMZM2G169270 (Zea mays)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GRMZM2G169270 T322627_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.944 0.827
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.943 0.827
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.943 0.827
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.943 0.827
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.941 0.827
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.940 0.787
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.939 0.773
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.939 0.773
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.939 0.773
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.938 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.934 0.720
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.932 0.827
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.927 0.707
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.918 0.693
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.918 0.693
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.918 0.693
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.913 0.693
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.904 0.640
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.901 0.667
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.901 0.667
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.901 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G169270_P01 SBP 165 239
GRMZM2G169270_P02 SBP 165 239

Links

Other SBP family TFs
Other Zea mays TFs

489 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB006415 Anopheles albimanus AALB006415 I 0.000
AARA010616 Anopheles arabiensis AARA010616 I 0.000
AATE016215 Anopheles atroparvus AATE016215 I 0.000
ACEP19638 Atta cephalotes ACEP19638 I 0.000
ACUA004409 Anopheles culicifacies ACUA004409 I 0.000
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I 0.000
ADAC003252 Anopheles darlingi ADAC003252 I 0.000
AFAF011136 Anopheles farauti AFAF011136 I 0.000
AGAP000281 Anopheles gambiae AGAP000281 I 0.000
AMEC012857 Anopheles melas AMEC012857 I 0.000
AMEM006878 Anopheles merus AMEM006878 I 0.000
Aqu1.209664 Amphimedon queenslandica Aqu1.209664 N 0.000
ASIS016667 Anopheles sinensis ASIS016667 I 0.000
ASTEI07799 Anopheles stephensi ASTEI07799 I 0.000
BGIBMGA006848 Bombyx mori BGIBMGA006848 I 0.000
Bm4188 Brugia malayi Bm4188 N 0.000
Cflo_00230--XP_624018.2_APIME Camponotus floridanus Cflo_00230--XP_624018.2_APIME N 0.000
CGI_10017717 Crassostrea gigas CGI_10017717 I 0.000
CLEC001918 Cimex lectularius CLEC001918 I 0.000
D917_02150 Trichinella nativa D917_02150 N 0.000
D918_09264 Trichuris suis D918_09264 N 0.000
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I 0.000
EDI_340970 Entamoeba dispar EDI_340970 N 0.000
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N 0.000
EFV61455 Trichinella spiralis EFV61455 N 0.000
ENSCING00000009516 Ciona intestinalis ENSCING00000009516 N 0.000
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N 0.000
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I 0.000
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.000
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.000
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I 0.000
ENSMMUG00000014077 Macaca mulatta ENSMMUG00000014077 N 0.000
ENSMPUG00000004579 Mustela putorius furo ENSMPUG00000004579 N 0.000
ENSOANG00000000353 Ornithorhynchus anatinus ENSOANG00000000353 N 0.000
ENSOGAG00000011763 Otolemur garnettii ENSOGAG00000011763 N 0.000
ENSONIG00000000284 Oreochromis niloticus ENSONIG00000000284 N 0.000
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N 0.000
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N 0.000
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N 0.000
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.000
ENSTBEG00000006802 Tupaia belangeri ENSTBEG00000006802 N 0.000
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.000
ENSTNIG00000002151 Tetraodon nigroviridis ENSTNIG00000002151 N 0.000
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I 0.000
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N 0.000
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.000
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.000
Eucgr.I01920 Eucalyptus grandis Eucgr.I01920 N 0.000
fgenesh2_pg.scaffold_177000008 Branchiostoma floridae fgenesh2_pg.scaffold_177000008 N 0.000
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N 0.000
GB43084 Apis mellifera GB43084 I 0.000
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N 0.000
HelroG145107 Helobdella robusta HelroG145107 N 0.000
HelroG91764 Helobdella robusta HelroG91764 N 0.000
HHAL000823-PA Halyomorpha halys HHAL000823-PA I 0.000
HMEL005034 Heliconius melpomene HMEL005034 I 0.000
Hmgb1 Rattus norvegicus ENSRNOG00000029813 N 0.000
hmgb2a Danio rerio ENSDARG00000029722 N 0.000
ISCW015985 Ixodes scapularis ISCW015985 N 0.000
ISCW018867 Ixodes scapularis ISCW018867 I 0.000
KGM_14572 Danaus plexippus KGM_14572 I 0.000
LCUP006200 Lucilia cuprina LCUP006200 N 0.000
LOAG_18151 Loa loa LOAG_18151 N 0.000
LotgiG109021 Lottia gigantea LotgiG109021 I 0.000
MCINX005468 Melitaea cinxia MCINX005468 I 0.000
MDOA008605 Musca domestica MDOA008605 N 0.000
mgf006762m Mimulus guttatus mgf006762m N 0.000
Myotis_brandtii_DAP3_10031965 Myotis brandtii Myotis_brandtii_DAP3_10031965 N 0.000
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N 0.000
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N 0.000
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N 0.000
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N 0.000
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N 0.000
NV10488 Nasonia vitripennis NV10488 I 0.000
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I 0.000
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N 0.000
RO3G_05222 Rhizopus oryzae RO3G_05222 N 0.000
RPRC000650 Rhodnius prolixus RPRC000650 I 0.000
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N 0.000
Smp_063790 Schistosoma mansoni Smp_063790 N 0.000
SMU15029818 Schmidtea mediterranea SMU15029818 I 0.000
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N 0.000
TC012723 Tribolium castaneum TC012723 I 0.000
TCM_014800 Theobroma cacao TCM_014800 N 0.000
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N 0.000
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I 0.000
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.000
tox2 Gasterosteus aculeatus ENSGACG00000006914 N 0.000
tox2 Oryzias latipes ENSORLG00000004818 N 0.000
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N 0.000
tox4.S Xenopus laevis XB-GENE-993810 I 0.000
tox4a Gasterosteus aculeatus ENSGACG00000014107 I 0.000
tox4b Takifugu rubripes ENSTRUG00000002594 N 0.000
tox4b Tetraodon nigroviridis ENSTNIG00000003691 N 0.000
tox4b Oryzias latipes ENSORLG00000008779 N 0.000
tox4b Danio rerio ENSDARG00000100163 I 0.000
TTHERM_00216040 Tetrahymena thermophila TTHERM_00216040 N 0.000
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N 0.000
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I 0.000
WBGene00236865 Onchocerca volvulus WBGene00236865 N 0.000
WUBG_03914 Wuchereria bancrofti WUBG_03914 N 0.000
XP_002936155 Xenopus tropicalis XP_002936155 N 0.000