GRMZM2G307588 (Zea mays)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GRMZM2G307588 T322628_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.916 0.760
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.911 0.667
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.898 0.653
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.893 0.680
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.890 0.707
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.890 0.707
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.890 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G307588_P01 SBP 64 138

Links

Other SBP family TFs
Other Zea mays TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.986
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.982
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.979
OBART09G14800 Oryza barthii OBART09G14800 I 0.978
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.978
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.978
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.978
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.978
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.978
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.978
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.977
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.974
F775_10743 Aegilops tauschii F775_10743 I 0.973
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.972
Si030195m.g Setaria italica Si030195m.g I 0.972
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.972
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.966
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.965
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.964
OB09G21350 Oryza brachyantha OB09G21350 N 0.964
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.964
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.963
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.963
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.963
SPL14 Oryza sativa OS08G0509600 I 0.963
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.963
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.963
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.963
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.963
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.963
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.962
Si013870m.g Setaria italica Si013870m.g I 0.961
TCM_024873 Theobroma cacao TCM_024873 I 0.959
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.959
OB08G26920 Oryza brachyantha OB08G26920 I 0.959
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.959
29269.m000250 Ricinus communis 29269.m000250 I 0.959
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.959
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.958
OS09G0491532 Oryza sativa OS09G0491532 I 0.958
PK18312.1 Cannabis sativa PK18312.1 I 0.957
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.957
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.956
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.956
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.956
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.955
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.955
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.955
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.955
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.954
Ca_07299 Cicer arietinum Ca_07299 I 0.950
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.950
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.949
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.948
mgf012995m Mimulus guttatus mgf012995m I 0.946
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.945
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.942
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.942
MDP0000297978 Malus domestica MDP0000297978 I 0.942
Pm002693 Prunus mume Pm002693 I 0.942
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.940
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.940
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.939
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.936
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.932
mgf001295m Mimulus guttatus mgf001295m I 0.931
PK11310.1 Cannabis sativa PK11310.1 I 0.931
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.930
Pm007035 Prunus mume Pm007035 I 0.928
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.928
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.926
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.924
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.923
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.923
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.918
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.916
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.916
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.916
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.916
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.916
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.916
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.914
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.912
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.912
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.911
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.911
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.911
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.911
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.911
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.911
PK06791.1 Cannabis sativa PK06791.1 D 0.911
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.911
30076.m004574 Ricinus communis 30076.m004574 I 0.911
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.911
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.911
Ca_03548 Cicer arietinum Ca_03548 I 0.911
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.911
TCM_004922 Theobroma cacao TCM_004922 I 0.910
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.909
mgf009459m Mimulus guttatus mgf009459m I 0.908
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.907
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.907
Si034095m.g Setaria italica Si034095m.g I 0.907
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.907
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.907
mgf025134m Mimulus guttatus mgf025134m I 0.906
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.905
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.904
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.904
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.903
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.903
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.903
29889.m003388 Ricinus communis 29889.m003388 I 0.903
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.902
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.902
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.902
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.901
Bra041037 Brassica rapa Bra041037 I 0.901
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.901
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.901
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.901
OLONG_015903 Oryza longistaminata OLONG_015903 N 0.901
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.901
Bo4g005730 Brassica oleracea Bo4g005730 I 0.901
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.900
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.900
MDP0000180408 Malus domestica MDP0000180408 I 0.900
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.900
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.900
TCM_021482 Theobroma cacao TCM_021482 I 0.900
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.900
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.899
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.899
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.899
OB08G27190 Oryza brachyantha OB08G27190 I 0.899
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.898
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.898
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.898
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.898
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.898
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.898
SPL4 Arabidopsis thaliana AT1G53160 D 0.898
Pm017778 Prunus mume Pm017778 I 0.898
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.897
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.897
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.897
MDP0000919694 Malus domestica MDP0000919694 I 0.897
OBART03G39900 Oryza barthii OBART03G39900 I 0.897
OB03G47050 Oryza brachyantha OB03G47050 I 0.897
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.897
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.897
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.897
SPL6 Oryza sativa OS03G0833300 I 0.897
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.897
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.897
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.896
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.896
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.896
Traes_7DS_E2A582546 Triticum aestivum Traes_7DS_E2A582546 N 0.896
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.895
Bra038101 Brassica rapa Bra038101 I 0.895
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.894
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.894
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.893
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.893
PK22320.1 Cannabis sativa PK22320.1 D 0.893
GRMZM2G460544 Zea mays GRMZM2G460544 N 0.893
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.893
MDP0000919693 Malus domestica MDP0000919693 I 0.893
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.893
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.893
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.893
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.893
F775_31139 Aegilops tauschii F775_31139 I 0.893
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.892
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.892
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.892
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.892
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.891
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.890
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.890
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.890
OBART07G15570 Oryza barthii OBART07G15570 I 0.890
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.890
SPL1 Arabidopsis thaliana AT2G47070 D 0.890
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.890
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.890
TCM_031595 Theobroma cacao TCM_031595 I 0.889
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.889
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.889
MDP0000156994 Malus domestica MDP0000156994 I 0.888
28211.m000132 Ricinus communis 28211.m000132 I 0.888
MDP0000262141 Malus domestica MDP0000262141 I 0.888
MDP0000861601 Malus domestica MDP0000861601 I 0.888
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.886