GSMUA_Achr3G11170_001 (Musa acuminata)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GSMUA_Achr3G11170_001 T322645_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.937 0.792
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.918 0.708
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.913 0.708
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.913 0.708
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.913 0.708
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.889 0.653
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P11170_001 SBP 43 114

Links

Other SBP family TFs
Other Musa acuminata TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
WUBG_01220 Wuchereria bancrofti WUBG_01220 N 0.000
GPUH_0001236501 Gongylonema pulchrum GPUH_0001236501 N 0.000
HCOI00019900 Haemonchus contortus HCOI00019900 N 0.000
HPBE_0000914901 Heligmosomoides bakeri HPBE_0000914901 N 0.000
nAv.1.0.1.g04153 Acanthocheilonema viteae nAv.1.0.1.g04153 N 0.000
nDi.2.2.2.g06500 Dirofilaria immitis nDi.2.2.2.g06500 N 0.000
nLs.2.1.2.g05187 Litomosoides sigmodontis nLs.2.1.2.g05187 N 0.000
nOo.2.0.1.g02446 Onchocerca ochengi nOo.2.0.1.g02446 N 0.000
OESDEN_10899 Oesophagostomum dentatum OESDEN_10899 N 0.000
OESDEN_21729 Oesophagostomum dentatum OESDEN_21729 N 0.000
OFLC_0001133401 Onchocerca flexuosa OFLC_0001133401 N 0.000
PEQ_0000179401 Parascaris equorum PEQ_0000179401 N 0.000
scaffold238-EXSNAP2012.17 Pristionchus exspectatus scaffold238-EXSNAP2012.17 N 0.000
EVEC_0000366901 Enterobius vermicularis EVEC_0000366901 N 0.000
DME_0000078101 Dracunculus medinensis DME_0000078101 N 0.000
BTMF_0000251301 Brugia timori BTMF_0000251301 N 0.000
Bm7270 Brugia malayi Bm7270 N 0.000
GB42021 Apis mellifera GB42021 N 0.000
LOAG_18045 Loa loa LOAG_18045 N 0.000
NV11270 Nasonia vitripennis NV11270 N 0.000
TC008693 Tribolium castaneum TC008693 N 0.000
WBGene00243099 Onchocerca volvulus WBGene00243099 N 0.000
YQE_05996 Dendroctonus ponderosae YQE_05996 N 0.000
Cflo_10168--XP_001121257.1_APIME Camponotus floridanus Cflo_10168--XP_001121257.1_APIME N 0.000
Hsal_12949--XP_001121257.1_APIME Harpegnathos saltator Hsal_12949--XP_001121257.1_APIME N 0.000
LDEC010382 Leptinotarsa decemlineata LDEC010382 N 0.000
ANCCAN_03211 Ancylostoma caninum ANCCAN_03211 N 0.000
ASU_07762 Ascaris suum ASU_07762 N 0.000
TCLT_0000794601 Thelazia callipaeda TCLT_0000794601 N 0.000