GSMUA_Achr3G11170_001 (Musa acuminata)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GSMUA_Achr3G11170_001 T322645_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.937 0.792
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.918 0.708
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.913 0.708
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.913 0.708
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.913 0.708
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.889 0.653
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr3P11170_001 SBP 43 114

Links

Other SBP family TFs
Other Musa acuminata TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28211.m000132 Ricinus communis 28211.m000132 I 0.912
29269.m000250 Ricinus communis 29269.m000250 I 0.966
29889.m003388 Ricinus communis 29889.m003388 I 0.920
30076.m004574 Ricinus communis 30076.m004574 I 0.918
30174.m008805 Ricinus communis 30174.m008805 I 0.909
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.947
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.907
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.933
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.961
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.901
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.901
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.943
Bo4g005730 Brassica oleracea Bo4g005730 I 0.919
Bo5g127310 Brassica oleracea Bo5g127310 I 0.888
Bo6g120690 Brassica oleracea Bo6g120690 I 0.889
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.889
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.919
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.919
Bra015732 Brassica rapa Bra015732 I 0.889
Bra027265 Brassica rapa Bra027265 I 0.888
Bra038101 Brassica rapa Bra038101 I 0.892
Bra041037 Brassica rapa Bra041037 I 0.919
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.923
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.969
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.974
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.925
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.919
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.909
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.917
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.893
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.918
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.908
Ca_03548 Cicer arietinum Ca_03548 I 0.918
Ca_07299 Cicer arietinum Ca_07299 I 0.954
Ca_10879 Cicer arietinum Ca_10879 I 0.914
Ca_24655 Cicer arietinum Ca_24655 I 0.889
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.914
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.918
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.890
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.962
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.894
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.918
Cla021411 Citrullus lanatus Cla021411 I 0.900
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.964
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.891
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.936
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.937
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.918
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.966
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.923
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.956
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.918
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.913
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.888
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.900
F775_10743 Aegilops tauschii F775_10743 I 0.957
F775_31139 Aegilops tauschii F775_31139 I 0.924
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.937
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.968
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.917
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.894
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.909
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.919
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.940
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.962
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.918
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.919
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.913
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.920
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.936
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.963
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.972
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.894
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.938
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.913
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.895
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I 0.887
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.918
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.913
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.956
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.927
GRMZM2G160917 Zea mays GRMZM2G160917 I 0.948
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.957
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.931
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.924
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.893
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.886
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.896
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.922
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.978
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.964
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.968
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.979
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.947
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.979
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.926
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.932
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.959
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.962
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.918
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.918
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.932
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.932
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.951
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.951
MDP0000156994 Malus domestica MDP0000156994 I 0.905
MDP0000180408 Malus domestica MDP0000180408 I 0.918
MDP0000180409 Malus domestica MDP0000180409 I 0.905
MDP0000262141 Malus domestica MDP0000262141 I 0.916
MDP0000297978 Malus domestica MDP0000297978 I 0.952
MDP0000861601 Malus domestica MDP0000861601 I 0.905
MDP0000919693 Malus domestica MDP0000919693 I 0.926
MDP0000919694 Malus domestica MDP0000919694 I 0.919
mgf001295m Mimulus guttatus mgf001295m I 0.943
mgf009459m Mimulus guttatus mgf009459m I 0.915
mgf012995m Mimulus guttatus mgf012995m I 0.958
mgf025134m Mimulus guttatus mgf025134m I 0.926
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.924
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.965
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.917
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.953
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.920
OB03G47050 Oryza brachyantha OB03G47050 I 0.928
OB04G27960 Oryza brachyantha OB04G27960 I 0.902
OB08G26920 Oryza brachyantha OB08G26920 I 0.974
OB08G27190 Oryza brachyantha OB08G27190 I 0.918
OB09G21350 Oryza brachyantha OB09G21350 N 0.937
OBART03G39900 Oryza barthii OBART03G39900 I 0.928
OBART04G20940 Oryza barthii OBART04G20940 I 0.901
OBART08G20010 Oryza barthii OBART08G20010 N 0.894
OBART09G14800 Oryza barthii OBART09G14800 I 0.968
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.928
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.901
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.972
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.968
OLONG_020138 Oryza longistaminata OLONG_020138 N 0.894
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.928
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.901
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.968
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.928
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.901
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.972
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.968
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.928
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.928
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.901
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.972
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.968
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.918
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.897
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.890
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.962
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.928
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.901
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.972
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.968
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.928
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.901
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.972
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.968
OS09G0491532 Oryza sativa OS09G0491532 I 0.943
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.967
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.974
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.927
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.927
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.967
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.918
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I 0.922
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.894
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.893
PK06791.1 Cannabis sativa PK06791.1 D 0.918
PK11310.1 Cannabis sativa PK11310.1 I 0.943
PK18312.1 Cannabis sativa PK18312.1 I 0.968
Pm002693 Prunus mume Pm002693 I 0.952
Pm007035 Prunus mume Pm007035 I 0.933
Pm008474 Prunus mume Pm008474 I 0.901
Pm008475 Prunus mume Pm008475 I 0.901
Pm017778 Prunus mume Pm017778 I 0.921
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.895
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.910
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.923
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.894
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.909
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.923
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.901
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.918
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.952
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.952
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.896
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.921
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.923
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.955
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.909
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.893
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.898
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.894
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.923
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.890
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.893
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.898
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.927
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.964
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.895
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.968
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.918
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.918
Si013870m.g Setaria italica Si013870m.g I 0.975
Si030195m.g Setaria italica Si030195m.g I 0.967
Si034095m.g Setaria italica Si034095m.g I 0.927
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.918
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.922
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.923
SPL1 Arabidopsis thaliana AT2G47070 D 0.913
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.924
SPL14 Oryza sativa OS08G0509600 I 0.972
SPL4 Arabidopsis thaliana AT1G53160 D 0.889
SPL6 Oryza sativa OS03G0833300 I 0.928
SPL7 Oryza sativa OS04G0551500 I 0.901
TCM_004922 Theobroma cacao TCM_004922 I 0.917
TCM_005620 Theobroma cacao TCM_005620 I 0.913
TCM_021482 Theobroma cacao TCM_021482 I 0.918
TCM_024873 Theobroma cacao TCM_024873 I 0.966
TCM_031595 Theobroma cacao TCM_031595 I 0.913
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.925
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.888
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.889
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.888
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.889
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.924
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.921
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.952
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.924
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.967
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.924
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.918
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.918
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.966
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.913
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.899