CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
MLOC_52321
(
Hordeum vulgare
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
MLOC_52321
T322721_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.959
0.773
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.899
0.707
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.898
0.653
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.892
0.707
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.892
0.707
SPL14
M11270_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.892
0.707
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MLOC_52321.1
SBP
38
70
TVVCRFHLLGEFDEVKRSCRKRLDGHNRRRRKP
MLOC_52321.2
SBP
28
102
CSVEGCTADLSRCREYHRRHKVCEAHSKTPVVAVAGQQQRFCQQCSRFHLLGEFDEVKRSCRKRLDGHNRRRRKP
MLOC_52321.4
SBP
54
84
QQRFHLLGEFDEVKRSCRKRLDGHNRRRRKP
Links
Other
SBP
family TFs
Other
Hordeum vulgare
TFs
316 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy