MTR_2g020620 (Medicago truncatula)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MTR_2g020620 T322731_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL7
M02476_2.00 		Arabidopsis thaliana
DGTACKDNN
NNHMGTACH		 PBM
Weirauch et al.(2014)
pTH7288 		0.961 0.743
SPL7
M00888_2.00 		Arabidopsis thaliana
GGRGDAAAGG
CCTTTHCYCC		 PBM
Franco-Zorrilla et al.(2014)
SPL7 		0.961 0.743
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES64286 SBP 91 164
KEH36715 SBP 14 60

Links

Other SBP family TFs
Other Medicago truncatula TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.253690 Cucumis sativus Cucsa.253690 I 0.973
Cla022022 Citrullus lanatus Cla022022 I 0.973
GLYMA13G28460 Glycine max GLYMA13G28460 I 0.971
AMTR_s00197p00030350 Amborella trichopoda AMTR_s00197p00030350 I 0.970
PGSC0003DMG401006284 Solanum tuberosum PGSC0003DMG401006284 I 0.969
GSMUA_Achr9G17440_001 Musa acuminata GSMUA_Achr9G17440_001 I 0.969
Cagra.0263s0012 Capsella grandiflora Cagra.0263s0012 I 0.969
Solyc01g080670.2 Solanum lycopersicum Solyc01g080670.2 I 0.969
Bostr.26527s0326 Boechera stricta Bostr.26527s0326 I 0.969
SPL7 Vitis vinifera VIT_05s0020g02160 I 0.969
cassava7956.valid.m1 Manihot esculenta cassava7956.valid.m1 I 0.969
Carubv10002913m.g Capsella rubella Carubv10002913m.g I 0.969
cassava7955.valid.m1 Manihot esculenta cassava7955.valid.m1 I 0.969
Bra002188 Brassica rapa Bra002188 I 0.968
Eucgr.B01228 Eucalyptus grandis Eucgr.B01228 I 0.968
Bo9g154530 Brassica oleracea Bo9g154530 I 0.968
Si021754m.g Setaria italica Si021754m.g I 0.967
GSMUA_Achr3G23780_001 Musa acuminata GSMUA_Achr3G23780_001 I 0.966
Lus10033993.g Linum usitatissimum Lus10033993.g I 0.966
Lus10012782.g Linum usitatissimum Lus10012782.g I 0.966
Ciclev10004348m.g Citrus clementina Ciclev10004348m.g I 0.965
Sb09g020110 Sorghum bicolor Sb09g020110 I 0.965
SPL7 Arabidopsis lyrata scaffold_601959.1 I 0.965
OLONG_015968 Oryza longistaminata OLONG_015968 I 0.965
GRMZM2G109354 Zea mays GRMZM2G109354 I 0.965
LPERR05G12780 Leersia perrieri LPERR05G12780 I 0.965
orange1.1g003787m.g Citrus sinensis orange1.1g003787m.g I 0.965
Pavir.J00965 Panicum virgatum Pavir.J00965 I 0.965
Thhalv10012721m.g Eutrema salsugineum Thhalv10012721m.g I 0.965
SPL9 Oryza sativa OS05G0408200 I 0.965
OB05G24080 Oryza brachyantha OB05G24080 I 0.965
ORUFI05G17320 Oryza rufipogon ORUFI05G17320 I 0.965
OBART05G16150 Oryza barthii OBART05G16150 I 0.965
ONIVA05G16770 Oryza nivara ONIVA05G16770 I 0.965
OGLUM05G17090 Oryza glumaepatula OGLUM05G17090 I 0.965
Pavir.J03653 Panicum virgatum Pavir.J03653 I 0.964
OPUNC05G14270 Oryza punctata OPUNC05G14270 I 0.963
TCM_021101 Theobroma cacao TCM_021101 I 0.962
GSMUA_Achr3G09190_001 Musa acuminata GSMUA_Achr3G09190_001 I 0.962
29726.m003959 Ricinus communis 29726.m003959 I 0.962
POPTR_0008s20160 Populus trichocarpa POPTR_0008s20160 I 0.961
Traes_1BL_8709BB152 Triticum aestivum Traes_1BL_8709BB152 I 0.961
SPL7 Arabidopsis thaliana AT5G18830 D 0.961
Gorai.011G183800 Gossypium raimondii Gorai.011G183800 I 0.958
PK29723.1 Cannabis sativa PK29723.1 I 0.957
mgf004695m Mimulus guttatus mgf004695m I 0.954
F775_04392 Aegilops tauschii F775_04392 I 0.953
MDP0000271587 Malus domestica MDP0000271587 I 0.952
Ca_00550 Cicer arietinum Ca_00550 I 0.951
SapurV1A.0152s0370 Salix purpurea SapurV1A.0152s0370 I 0.947
POPTR_0010s02710 Populus trichocarpa POPTR_0010s02710 I 0.947
gene06692-v1.0-hybrid Fragaria vesca gene06692-v1.0-hybrid I 0.946
GSMUA_Achr5G26880_001 Musa acuminata GSMUA_Achr5G26880_001 I 0.946
Pm008092 Prunus mume Pm008092 I 0.945
PRUPE_ppa001613mg Prunus persica PRUPE_ppa001613mg I 0.945
Gorai.005G056500 Gossypium raimondii Gorai.005G056500 I 0.944
Bo00629s160 Brassica oleracea Bo00629s160 I 0.940
Bra023695 Brassica rapa Bra023695 I 0.940
BRADI2G25580 Brachypodium distachyon BRADI2G25580 I 0.935
cassava1985.valid.m1 Manihot esculenta cassava1985.valid.m1 I 0.934
MDP0000195461 Malus domestica MDP0000195461 I 0.931
Aquca_026_00098 Aquilegia coerulea Aquca_026_00098 I 0.929
SapurV1A.0407s0040 Salix purpurea SapurV1A.0407s0040 I 0.925