MTR_7g028740 (Medicago truncatula)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MTR_7g028740 T322740_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.916 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH21978 SBP 77 151

Links

Other SBP family TFs
Other Medicago truncatula TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004627 Ricinus communis 29929.m004627 I 0.912
30138.m003942 Ricinus communis 30138.m003942 I 0.949
30174.m009082 Ricinus communis 30174.m009082 I 0.947
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.904
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.938
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.933
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.908
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.917
Bo2g062840 Brassica oleracea Bo2g062840 I 0.927
Bo3g024180 Brassica oleracea Bo3g024180 I 0.916
Bo3g042890 Brassica oleracea Bo3g042890 I 0.947
Bo6g108620 Brassica oleracea Bo6g108620 N 0.896
Bo9g097630 Brassica oleracea Bo9g097630 I 0.918
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.905
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.914
Bra004363 Brassica rapa Bra004363 N 0.895
Bra022766 Brassica rapa Bra022766 I 0.913
Bra038324 Brassica rapa Bra038324 I 0.929
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.915
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.916
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.944
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.944
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.916
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.887
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.943
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.907
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.944
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.915
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.937
Ca_01426 Cicer arietinum Ca_01426 I 0.910
Ca_05711 Cicer arietinum Ca_05711 I 0.904
Ca_19449 Cicer arietinum Ca_19449 I 0.950
Ca_24655 Cicer arietinum Ca_24655 I 0.918
Ca_24733 Cicer arietinum Ca_24733 I 0.966
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.893
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.935
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.920
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.926
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.907
Cla001541 Citrullus lanatus Cla001541 I 0.947
Cla002666 Citrullus lanatus Cla002666 I 0.917
Cla004156 Citrullus lanatus Cla004156 I 0.909
Cla018827 Citrullus lanatus Cla018827 I 0.943
Cla019331 Citrullus lanatus Cla019331 I 0.947
Cla019579 Citrullus lanatus Cla019579 I 0.896
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.909
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.947
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.900
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.950
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.947
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.917
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.952
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.953
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.915
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.932
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.946
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.941
gene01338-v1.0-hybrid Fragaria vesca gene01338-v1.0-hybrid I 0.888
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.944
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.909
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.952
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.950
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.926
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.926
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.915
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.950
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.910
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.902
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.910
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.910
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.905
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.975
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.950
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.976
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.917
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.952
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.903
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.907
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.916
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.891
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.911
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.924
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.917
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.924
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.933
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.924
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.921
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.934
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.920
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.917
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.982
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.921
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.956
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.961
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.944
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.912
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.886
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.947
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.957
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.886
MDP0000119458 Malus domestica MDP0000119458 I 0.961
MDP0000142582 Malus domestica MDP0000142582 N 0.932
MDP0000146640 Malus domestica MDP0000146640 I 0.949
MDP0000171877 Malus domestica MDP0000171877 I 0.940
MDP0000193702 Malus domestica MDP0000193702 I 0.961
MDP0000246046 Malus domestica MDP0000246046 I 0.940
MDP0000589558 Malus domestica MDP0000589558 I 0.922
MDP0000778465 Malus domestica MDP0000778465 I 0.949
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.924
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.895
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.950
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.910
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.950
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.889
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.904
OBART01G42150 Oryza barthii OBART01G42150 I 0.892
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.917
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.917
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.945
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.917
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.917
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.935
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.920
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.926
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.898
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.917
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.956
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.917
OS01G0922600 Oryza sativa OS01G0922600 I 0.903
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.909
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.949
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.909
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.944
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.949
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.909
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.909
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.947
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.944
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.945
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.931
PK02140.1 Cannabis sativa PK02140.1 I 0.912
PK03565.1 Cannabis sativa PK03565.1 I 0.889
PK14243.1 Cannabis sativa PK14243.1 N 0.902
PK17790.1 Cannabis sativa PK17790.1 I 0.947
PK19500.1 Cannabis sativa PK19500.1 I 0.926
Pm024528 Prunus mume Pm024528 I 0.917
Pm025028 Prunus mume Pm025028 I 0.948
Pm030597 Prunus mume Pm030597 I 0.942
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.888
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.943
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.947
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.917
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.946
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.917
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.952
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.917
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.942
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.947
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.911
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.894
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.956
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.911
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.901
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.924
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.928
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.922
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.899
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.899
Si001804m.g Setaria italica Si001804m.g I 0.949
Si013747m.g Setaria italica Si013747m.g N 0.909
Si026656m.g Setaria italica Si026656m.g I 0.944
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.945
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.931
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.947
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.944
SPL13A Arabidopsis thaliana AT5G50670 D 0.916
SPL13A Arabidopsis thaliana AT5G50570 I 0.916
SPL19 Oryza sativa OS11G0496600 I 0.956
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.925
SPL6 Arabidopsis thaliana AT1G69170 I 0.940
TCM_008671 Theobroma cacao TCM_008671 I 0.907
TCM_011483 Theobroma cacao TCM_011483 I 0.949
TCM_014330 Theobroma cacao TCM_014330 I 0.948
TCM_014668 Theobroma cacao TCM_014668 I 0.926
TCM_017247 Theobroma cacao TCM_017247 N 0.919
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.918
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.944
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.911
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.945
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.887
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.927
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.914
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.947