OBART04G20940 (Oryza barthii)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 OBART04G20940 T322775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.941 0.707
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.937 0.653
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.937 0.653
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.937 0.653
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.935 0.640
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.935 0.680
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.930 0.720
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.929 0.693
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.929 0.640
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.927 0.680
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.927 0.680
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.927 0.680
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.922 0.640
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.920 0.653
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.920 0.680
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.920 0.680
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.920 0.680
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.895 0.693
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.895 0.693
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.895 0.693
SPL13A
M07265_2.00
Arabidopsis thaliana
DNYGTACGGWH

DWCCGTACRNH
Dap-seq
OMalley et al.(2016)
SPL13_col_a
0.889 0.613
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART04G20940.1 SBP 108 182

Links

Other SBP family TFs
Other Oryza barthii TFs

521 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CpipJ_CPIJ017141 Culex pipiens CpipJ_CPIJ017141 N 0.000
ACOM030328 Anopheles coluzzii ACOM030328 N 0.000
ACUA020902 Anopheles culicifacies ACUA020902 N 0.000
ACUA025006 Anopheles culicifacies ACUA025006 N 0.000
AFAF010565 Anopheles farauti AFAF010565 N 0.000
AFUN010911 Anopheles funestus AFUN010911 N 0.000
AMAM000895 Anopheles maculatus AMAM000895 N 0.000
AMAM006139 Anopheles maculatus AMAM006139 N 0.000
AMEC020838 Anopheles melas AMEC020838 N 0.000
AMEM007137 Anopheles merus AMEM007137 N 0.000
AQUA000693 Anopheles quadriannulatus AQUA000693 N 0.000
MDOA010781 Musca domestica MDOA010781 N 0.000
AATE002520 Anopheles atroparvus AATE002520 N 0.000
AARA014439 Anopheles arabiensis AARA014439 N 0.000
AARA004912 Anopheles arabiensis AARA004912 N 0.000
BGIBMGA008844 Bombyx mori BGIBMGA008844 N 0.000
CPIJ017141 Culex quinquefasciatus CPIJ017141 N 0.000
MESCA005460 Megaselia scalaris MESCA005460 N 0.000
RPRC010843 Rhodnius prolixus RPRC010843 N 0.000
RPRC011444 Rhodnius prolixus RPRC011444 N 0.000
YQE_05716 Dendroctonus ponderosae YQE_05716 N 0.000
CLEC006352 Cimex lectularius CLEC006352 N 0.000
CLEC007981 Cimex lectularius CLEC007981 N 0.000
HHAL008874-PA Halyomorpha halys HHAL008874-PA N 0.000
LDEC020261 Leptinotarsa decemlineata LDEC020261 N 0.000
AALB014004 Anopheles albimanus AALB014004 N 0.000
PPAI007183 Phlebotomus papatasi PPAI007183 N 0.000