ORGLA02G0053800 (Oryza glaberrima)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 ORGLA02G0053800 T322876_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW

WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.931 0.787
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN

NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.906 0.760
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN

NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.904 0.760
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA02G0053800.1 SBP 197 271

Links

Other SBP family TFs
Other Oryza glaberrima TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.904
SPL8 Arabidopsis thaliana AT1G02065 D 0.931
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.906
Pm011381 Prunus mume Pm011381 I 0.917
Cla023735 Citrullus lanatus Cla023735 I 0.912
Cla020006 Citrullus lanatus Cla020006 I 0.936
Cla006776 Citrullus lanatus Cla006776 I 0.930
Ca_18942 Cicer arietinum Ca_18942 I 0.933
Ca_16243 Cicer arietinum Ca_16243 I 0.913
Pm017777 Prunus mume Pm017777 I 0.900
29983.m003158 Ricinus communis 29983.m003158 I 0.899
30174.m008803 Ricinus communis 30174.m008803 I 0.933
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.901
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.933
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.895
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.930
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.918
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.928
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.927
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.900
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.946
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.891
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.938
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.932
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.891
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.908
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.908
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.932
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.935
Si006559m.g Setaria italica Si006559m.g I 0.970
Si017338m.g Setaria italica Si017338m.g I 0.980
Si022315m.g Setaria italica Si022315m.g I 0.900
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.932
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.932
TCM_005622 Theobroma cacao TCM_005622 I 0.933
TCM_029832 Theobroma cacao TCM_029832 I 0.891
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.970
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.970
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.931
MDP0000156994 Malus domestica MDP0000156994 I 0.911
MDP0000158607 Malus domestica MDP0000158607 I 0.917
MDP0000803116 Malus domestica MDP0000803116 I 0.931
MDP0000861601 Malus domestica MDP0000861601 I 0.911
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.933
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.960
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.970
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.970
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.900
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.900
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.927
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.933
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.912
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.931
PK25779.1 Cannabis sativa PK25779.1 I 0.933
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.935
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.937
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.933
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.931
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.902
mgf016085m Mimulus guttatus mgf016085m I 0.935
mgf016414m Mimulus guttatus mgf016414m I 0.888
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.952
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.893
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.931
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.931
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.933
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.933
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.905
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.933
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.932
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.918
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.933
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.913
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.944
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.969
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.973
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.980
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.952
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.934
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.958
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.965
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.929
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.940
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.911
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.974
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.976
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.900
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.970
MLOC_326 Hordeum vulgare MLOC_326 I 0.970
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.971
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.904
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.900
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.913
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.984
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.900
SPL10 Oryza indica BGIOSGA023408 I 0.970
Bo5g001290 Brassica oleracea Bo5g001290 I 0.931
Bo8g118210 Brassica oleracea Bo8g118210 I 0.931
Bra032662 Brassica rapa Bra032662 I 0.931
Bra033221 Brassica rapa Bra033221 I 0.931
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.964
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.973
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.900
F775_00761 Aegilops tauschii F775_00761 I 0.927
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.931
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.903
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.933
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.913
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.933
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.900
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.942
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.970
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.900
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.970
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.900
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.970
SPL5 Oryza sativa OS02G0177300 I 0.984
SPL8 Oryza sativa OS04G0656500 I 0.900
SPL10 Oryza sativa OS06G0659100 I 0.970
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.932
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.932
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.912
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.933
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.933
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.900
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.917
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.973
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.900
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.979
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.930
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.913
OB02G15090 Oryza brachyantha OB02G15090 I 0.976
OB04G34990 Oryza brachyantha OB04G34990 I 0.900
OB06G31100 Oryza brachyantha OB06G31100 I 0.970
OBART04G27990 Oryza barthii OBART04G27990 I 0.900
OBART06G23500 Oryza barthii OBART06G23500 I 0.956
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.900
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.970
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.900
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.984
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.900
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.970
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.970
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.900
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.900
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.954
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.932