PGSC0003DMG400011433 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400011433 T322926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.927 0.813
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.927 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.887 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400029749 SBP 76 150
PGSC0003DMT400029750 SBP 7 41
PGSC0003DMT400029751 SBP 76 150

Links

Other SBP family TFs
Other Solanum tuberosum TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I 0.987
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I 0.983
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I 0.967
PK18312.1 Cannabis sativa PK18312.1 I 0.955
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.953
29269.m000250 Ricinus communis 29269.m000250 I 0.953
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.953
TCM_024873 Theobroma cacao TCM_024873 I 0.953
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.951
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.950
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.949
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.948
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.947
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.947
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I 0.944
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I 0.943
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I 0.943
Thhalv10006058m.g Eutrema salsugineum Thhalv10006058m.g I 0.941
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.941
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.941
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I 0.940
Ca_07299 Cicer arietinum Ca_07299 I 0.940
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I 0.939
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I 0.939
MTR_7g092930 Medicago truncatula MTR_7g092930 I 0.938
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I 0.937
F775_10743 Aegilops tauschii F775_10743 I 0.931
Pm002693 Prunus mume Pm002693 I 0.930
MDP0000297978 Malus domestica MDP0000297978 I 0.930
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.930
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.930
Carubv10017540m.g Capsella rubella Carubv10017540m.g I 0.928
Bostr.20903s0043 Boechera stricta Bostr.20903s0043 I 0.928
Cagra.0686s0010 Capsella grandiflora Cagra.0686s0010 I 0.928
Bostr.20903s0042 Boechera stricta Bostr.20903s0042 I 0.928
SPL15 Arabidopsis lyrata fgenesh2_kg.5__2235__AT3G57920.1 I 0.927
SPL15 Arabidopsis thaliana AT3G57920 D 0.927
OB08G26920 Oryza brachyantha OB08G26920 I 0.926
Bo4g109710 Brassica oleracea Bo4g109710 I 0.926
Bo6g073290 Brassica oleracea Bo6g073290 I 0.926
mgf001295m Mimulus guttatus mgf001295m I 0.924
ONIVA08G22610 Oryza nivara ONIVA08G22610 I 0.924
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I 0.924
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I 0.924
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I 0.924
OPUNC08G18140 Oryza punctata OPUNC08G18140 I 0.924
SPL14 Oryza sativa OS08G0509600 I 0.924
Si030195m.g Setaria italica Si030195m.g I 0.923
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.923
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.923
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I 0.922
OMERI09G11520 Oryza meridionalis OMERI09G11520 I 0.922
OBART09G14800 Oryza barthii OBART09G14800 I 0.922
ONIVA09G15400 Oryza nivara ONIVA09G15400 I 0.922
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I 0.922
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.922
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I 0.922
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I 0.922
TRIUR3_23872 Triticum urartu TRIUR3_23872 I 0.922
OPUNC09G13250 Oryza punctata OPUNC09G13250 I 0.922
Si013870m.g Setaria italica Si013870m.g I 0.920
Sb07g027740 Sorghum bicolor Sb07g027740 I 0.918
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I 0.918
GLYMA02G30670 Glycine max GLYMA02G30670 I 0.917
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I 0.916
Sb02g028420 Sorghum bicolor Sb02g028420 I 0.914
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.913
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.913
OS09G0491532 Oryza sativa OS09G0491532 I 0.911
BGIOSGA029541 Oryza indica BGIOSGA029541 I 0.911
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.911
LPERR09G10900 Leersia perrieri LPERR09G10900 I 0.909
mgf012995m Mimulus guttatus mgf012995m I 0.908
Bra003305 Brassica rapa Bra003305 I 0.907
Bra014599 Brassica rapa Bra014599 I 0.904
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.899
GRMZM2G307588 Zea mays GRMZM2G307588 I 0.898
GLYMA18G36960 Glycine max GLYMA18G36960 I 0.895
GRMZM2G126018 Zea mays GRMZM2G126018 I 0.895
LPERR08G16940 Leersia perrieri LPERR08G16940 I 0.893
Pm007035 Prunus mume Pm007035 I 0.890
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.890
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.890
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.887
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.887
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.886