PGSC0003DMG400011433 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400011433 T322926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL15
M07263_2.00 		Arabidopsis thaliana
DNWNTGTACGGAHN
NDTCCGTACANWNH		 Dap-seq
OMalley et al.(2016)
SPL15_col_a 		0.927 0.813
SPL15
M07264_2.00 		Arabidopsis thaliana
DNTGTACGGAHNNNN
NNNNDTCCGTACANH		 Dap-seq
OMalley et al.(2016)
SPL15_colamp_a 		0.927 0.813
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.887 0.787
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400029749 SBP 76 150
PGSC0003DMT400029750 SBP 7 41
PGSC0003DMT400029751 SBP 76 150

Links

Other SBP family TFs
Other Solanum tuberosum TFs

Invalid Input OrderBy

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action