PGSC0003DMG400032817 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400032817 T322936_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.954 0.867
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.953 0.773
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.953 0.773
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.953 0.773
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.934 0.747
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.929 0.733
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.928 0.693
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.926 0.693
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.926 0.747
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.926 0.747
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.926 0.747
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.925 0.693
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.925 0.693
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.925 0.693
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.923 0.693
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.921 0.707
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.921 0.707
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.921 0.707
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.915 0.680
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.915 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400082788 SBP 59 111
PGSC0003DMT400082789 SBP 59 133

Links

Other SBP family TFs
Other Solanum tuberosum TFs

441 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Tal_R011337 Tyto alba Tal_R011337 N 0.000
TIGD4 Pan troglodytes ENSPTRG00000016518 N 0.000
ENSPSIG00000000540 Pelodiscus sinensis ENSPSIG00000000540 N 0.000
ENSPPYG00000015125 Pongo abelii ENSPPYG00000015125 N 0.000
TIGD4 Procavia capensis ENSPCAG00000014843 N 0.000
ENSPANG00000002290 Papio anubis ENSPANG00000002290 N 0.000
TIGD4 Ochotona princeps ENSOPRG00000009824 N 0.000
TIGD4 Otolemur garnettii ENSOGAG00000005277 N 0.000
ENSOARG00000015061 Ovis aries ENSOARG00000015061 N 0.000
ENSNLEG00000005902 Nomascus leucogenys ENSNLEG00000005902 N 0.000
TIGD4 Pteropus vampyrus ENSPVAG00000013544 N 0.000
Tigd4 Rattus norvegicus ENSRNOG00000010741 N 0.000
ENSSHAG00000007826 Sarcophilus harrisii ENSSHAG00000007826 N 0.000
Gfo_R010567 Geospiza fortis Gfo_R010567 N 0.000
ENSP00000355162 Macaca fascicularis ENSP00000355162 N 0.000
ENSP00000355162-D1 Bos grunniens ENSP00000355162-D1 N 0.000
Brh_R000757 Buceros rhinoceros Brh_R000757 N 0.000
Afo_R012887 Aptenodytes forsteri Afo_R012887 N 0.000
Aan_R015007 Calypte anna Aan_R015007 N 0.000
TIGD4 Tursiops truncatus ENSTTRG00000016046 N 0.000
TIGD4 Taeniopygia guttata ENSTGUG00000005046 N 0.000
ENSSTOG00000020903 Ictidomys tridecemlineatus ENSSTOG00000020903 N 0.000
Tigd4 Mus musculus ENSMUSG00000047819 N 0.000
ENSMPUG00000019997 Mustela putorius furo ENSMPUG00000019997 N 0.000
TIGD4 Equus caballus ENSECAG00000004395 N 0.000
Tigd4 Dipodomys ordii ENSDORG00000008170 N 0.000
TIGD4 Dasypus novemcinctus ENSDNOG00000006525 N 0.000
ENSCSAG00000000386 Chlorocebus sabaeus ENSCSAG00000000386 N 0.000
ENSCPOG00000022575 Cavia porcellus ENSCPOG00000022575 N 0.000
TIGD4 Callithrix jacchus ENSCJAG00000021812 N 0.000
TIGD4 Choloepus hoffmanni ENSCHOG00000003926 N 0.000
TIGD4 Canis familiaris ENSCAFG00000008168 N 0.000
TIGD4 Bos taurus ENSBTAG00000009161 N 0.000
TIGD4 Erinaceus europaeus ENSEEUG00000001554 N 0.000
TIGD4 Echinops telfairi ENSETEG00000011110 N 0.000
TIGD4 Felis catus ENSFCAG00000028877 N 0.000
TIGD4 Monodelphis domestica ENSMODG00000001071 N 0.000
TIGD4 Macaca mulatta ENSMMUG00000018489 N 0.000
TIGD4 Myotis lucifugus ENSMLUG00000028008 N 0.000
ENSMICG00000012196 Microcebus murinus ENSMICG00000012196 N 0.000
ENSMEUG00000006670 Macropus eugenii ENSMEUG00000006670 N 0.000
TIGD4 Loxodonta africana ENSLAFG00000028471 N 0.000
ENSLACG00000001352 Latimeria chalumnae ENSLACG00000001352 N 0.000
TIGD4 Gorilla gorilla ENSGGOG00000011836 N 0.000
TIGD4 Homo sapiens ENSG00000169989 N 0.000
ENSAMEG00000019149 Ailuropoda melanoleuca ENSAMEG00000019149 N 0.000