PGSC0003DMG400032817 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400032817 T322936_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN

NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.954 0.867
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.953 0.773
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.953 0.773
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.953 0.773
estExt_fgenesh1_pg.C_1940033
M02479_2.00
Physcomitrella patens
NNGTACGDH

DHCGTACNN
PBM
Weirauch et al.(2014)
pTH8664
0.934 0.747
SPL4
M02472_2.00
Arabidopsis thaliana
NRTACDDNN

NNHHGTAYN
PBM
Weirauch et al.(2014)
pTH7408
0.929 0.733
PK06791.1
M02482_2.00
Cannabis sativa
NNGTACGRN

NYCGTACNN
PBM
Weirauch et al.(2014)
pTH9583
0.928 0.693
SPL12
M02475_2.00
Arabidopsis thaliana
NGTACGDN

NHCGTACN
PBM
Weirauch et al.(2014)
pTH7500
0.926 0.693
SPL5
M02474_2.00
Arabidopsis thaliana
NNGTACGDN

NHCGTACNN
PBM
Weirauch et al.(2014)
pTH7385
0.926 0.747
SPL5
M07261_2.00
Arabidopsis thaliana
NDNYGTACGGAH

DTCCGTACRNHN
Dap-seq
OMalley et al.(2016)
SPL5_col_a
0.926 0.747
SPL5
M07262_2.00
Arabidopsis thaliana
NBGTACGGWH

DWCCGTACVN
Dap-seq
OMalley et al.(2016)
SPL5_colamp_a
0.926 0.747
SPL14
M02470_2.00
Arabidopsis thaliana
NNNRTACNN

NNGTAYNNN
PBM
Weirauch et al.(2014)
pTH8191
0.925 0.693
SPL14
M07253_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL14_col_a
0.925 0.693
SPL14
M11270_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SPL14_01
0.925 0.693
POPTR_0002s00440
M02477_2.00
Populus trichocarpa
NGTACGG

CCGTACN
PBM
Weirauch et al.(2014)
pTH9280
0.923 0.693
SPL1
M00887_2.00
Arabidopsis thaliana
NGTACGGHN

NDCCGTACN
PBM
Franco-Zorrilla et al.(2014)
SPL1
0.921 0.707
SPL1
M07259_2.00
Arabidopsis thaliana
NNNBGTACGGW

WCCGTACVNNN
Dap-seq
OMalley et al.(2016)
SPL1_col_a
0.921 0.707
SPL1
M07260_2.00
Arabidopsis thaliana
NNGTACGKWH

DWMCGTACNN
Dap-seq
OMalley et al.(2016)
SPL1_colamp_a
0.921 0.707
AT1G76580
M02473_2.00
Arabidopsis thaliana
NNNRTAYNNN

NNNRTAYNNN
PBM
Weirauch et al.(2014)
pTH8668
0.915 0.680
PRUPE_ppa000682mg
M02478_2.00
Prunus persica
NNNNGTACGD

HCGTACNNNN
PBM
Weirauch et al.(2014)
pTH9281
0.915 0.707
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400082788 SBP 59 111
PGSC0003DMT400082789 SBP 59 133

Links

Other SBP family TFs
Other Solanum tuberosum TFs

441 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NCU04827 Neurospora crassa NCU04827 D 0.000
MGG_00934 Magnaporthe oryzae MGG_00934 I 0.000
PDIP_36670 Penicillium digitatum PDIP_36670 I 0.000
PEX1_040030 Penicillium expansum PEX1_040030 I 0.000
PFICI_14300 Pestalotiopsis fici PFICI_14300 I 0.000
PITC_095760 Penicillium italicum PITC_095760 I 0.000
PMAA_030710 Talaromyces marneffei PMAA_030710 I 0.000
PODANS_4_9410 Podospora anserina PODANS_4_9410 I 0.000
PTRG_01524 Pyrenophora triticirepentis PTRG_01524 I 0.000
PTT_09455 Pyrenophora teres PTT_09455 I 0.000
PVAR5_6206 Byssochlamys spectabilis PVAR5_6206 I 0.000
S40285_02675 Stachybotrys chlorohalonata S40285_02675 I 0.000
S40288_06142 Stachybotrys chartarum S40288_06142 I 0.000
SAPIO_CDS10892 Scedosporium apiospermum SAPIO_CDS10892 I 0.000
PDE_08867 Penicillium oxalicum PDE_08867 I 0.000
PCH_Pc12g09500 Penicillium rubens PCH_Pc12g09500 I 0.000
PAS_chr1-3_0233 Komagataella pastoris PAS_chr1-3_0233 I 0.000
MGU_00406 Metarhizium guizhouense MGU_00406 I 0.000
MGYG_01468 Microsporum gypseum MGYG_01468 I 0.000
MPH_10060 Macrophomina phaseolina MPH_10060 I 0.000
MYCFIDRAFT_213699 Pseudocercospora fijiensis MYCFIDRAFT_213699 I 0.000
Mycgr3G109078 Zymoseptoria tritici Mycgr3G109078 I 0.000
MYCTH_2307005 Myceliophthora thermophila MYCTH_2307005 I 0.000
NechaG35283 Fusarium solani NechaG35283 I 0.000
NEUTE1DRAFT_50286 Neurospora tetrasperma NEUTE1DRAFT_50286 I 0.000
OCS_00083 Ophiocordyceps sinensis OCS_00083 I 0.000
OIDMADRAFT_198696 Oidiodendron maius OIDMADRAFT_198696 I 0.000
PAAG_01320 Paracoccidioides sp lutzii PAAG_01320 I 0.000
PABG_01889 Paracoccidioides brasiliensis PABG_01889 I 0.000
SEPMUDRAFT_76258 Sphaerulina musiva SEPMUDRAFT_76258 I 0.000
SETTUDRAFT_170602 Setosphaeria turcica SETTUDRAFT_170602 I 0.000
SMAC_03466 Sordaria macrospora SMAC_03466 I 0.000
W97_07856 Coniosporium apollinis W97_07856 I 0.000
X797_000651 Metarhizium robertsii X797_000651 I 0.000
e_gw1.2.1285.1 Nectria haematococca e_gw1.2.1285.1 I 0.000
estExt_fgenesh1_pg.C_110067 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_110067 I 0.000
estExt_fgenesh1_pg.C_chr_40282 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_40282 I 0.000
estExt_fgenesh2_pg.C_60189 Neurospora discreta estExt_fgenesh2_pg.C_60189 I 0.000
fgenesh1_pg.C_scaffold_1001721 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1001721 I 0.000
AB04928.1 Alternaria brassicicola AB04928.1 I 0.000
fgenesh1_pg.00118_#_483 Aspergillus carbonarius fgenesh1_pg.00118_#_483 I 0.000
fgenesh1_pg.C_scaffold_9000142 Cryphonectria parasitica fgenesh1_pg.C_scaffold_9000142 I 0.000
Pc12g09500 Penicillium chrysogenum Pc12g09500 I 0.000
PMAA_030710 Penicillium marneffei PMAA_030710 I 0.000
VHEMI06723 Torrubiella hemipterigena VHEMI06723 I 0.000
VDBG_09303 Verticillium alfalfae VDBG_09303 I 0.000
VDAG_07458 Verticillium dahliae VDAG_07458 I 0.000
SPBR_02265 Sporothrix brasiliensis SPBR_02265 I 0.000
SS1G_09555 Sclerotinia sclerotiorum SS1G_09555 I 0.000
TEQG_06861 Trichophyton equinum TEQG_06861 I 0.000
TESG_04227 Trichophyton tonsurans TESG_04227 I 0.000
TRIATDRAFT_138069 Trichoderma atroviride TRIATDRAFT_138069 I 0.000
TRIREDRAFT_5927 Trichoderma reesei TRIREDRAFT_5927 I 0.000
TRIVIDRAFT_63912 Trichoderma virens TRIVIDRAFT_63912 I 0.000
TRV_00539 Trichophyton verrucosum TRV_00539 I 0.000
TSTA_067480 Talaromyces stipitatus TSTA_067480 I 0.000
U727_00433560451 Penicillium solitum U727_00433560451 I 0.000
UV8b_2614 Ustilaginoidea virens UV8b_2614 I 0.000
V499_02600 Pseudogymnoascus pannorum V499_02600 I 0.000
XP_002489576.1 Pichia pastoris XP_002489576.1 I 0.000
MCYG_00495 Microsporum canis MCYG_00495 I 0.000
NFIA_053460 Neosartorya fischeri CADNFIAG00004356 I 0.000
CCM_04464 Cordyceps militaris CCM_04464 I 0.000
CFIO01_03460 Colletotrichum fioriniae CFIO01_03460 I 0.000
CGGC5_13834 Colletotrichum gloeosporioides CGGC5_13834 I 0.000
CH063_10711 Colletotrichum higginsianum CH063_10711 I 0.000
CHGG_08910 Chaetomium globosum CHGG_08910 I 0.000
Cob_10943 Colletotrichum orbiculare Cob_10943 I 0.000
COCC4DRAFT_191517 Bipolaris maydis COCC4DRAFT_191517 I 0.000
COCCADRAFT_6430 Bipolaris zeicola COCCADRAFT_6430 I 0.000
COCMIDRAFT_98079 Bipolaris oryzae COCMIDRAFT_98079 I 0.000
COCSADRAFT_187218 Bipolaris sorokiniana COCSADRAFT_187218 I 0.000
COCVIDRAFT_32096 Bipolaris victoriae COCVIDRAFT_32096 I 0.000
CPC735_051290 Coccidioides posadasii CPC735_051290 I 0.000
ATEG_05884 Aspergillus terreus CADATEAG00001041 I 0.000
CADAORAG00000832 Aspergillus oryzae CADAORAG00000832 I 0.000
ANIA_01927 Aspergillus nidulans CADANIAG00008587 I 0.000
VDBG_09303 Verticillium albo atrum VDBG_09303 I 0.000
ACRE_081720 Acremonium chrysogenum ACRE_081720 I 0.000
ARB_02947 Arthroderma benhamiae ARB_02947 I 0.000
AUEXF2481DRAFT_26753 Aureobasidium subglaciale AUEXF2481DRAFT_26753 I 0.000
BAUCODRAFT_346869 Baudoinia compniacensis BAUCODRAFT_346869 I 0.000
BBA_02826 Beauveria bassiana BBA_02826 I 0.000
Bcin13g02900 Botrytis cinerea Bcin13g02900 I 0.000
BDDG_08552 Blastomyces dermatitidis BDDG_08552 I 0.000
BGHDH14_bgh00563 Blumeria graminis BGHDH14_bgh00563 I 0.000
ACLA_081960 Aspergillus clavatus CADACLAG00007570 I 0.000
CADAFLAG00003022 Aspergillus flavus CADAFLAG00003022 I 0.000
AFUA_6G07800 Aspergillus fumigatus CADAFUAG00001843 I 0.000
CADANGAG00008606 Aspergillus niger CADANGAG00008606 I 0.000
CPUR_03981 Claviceps purpurea CPUR_03981 I 0.000
CSUB01_07077 Colletotrichum sublineola CSUB01_07077 I 0.000
H105_07443 Trichophyton soudanense H105_07443 I 0.000
HCBG_03081 Histoplasma capsulatum HCBG_03081 I 0.000
HMPREF1624_02358 Sporothrix schenckii HMPREF1624_02358 I 0.000
KUCA_T00003643001 Kuraishia capsulata KUCA_T00003643001 I 0.000
LEMA_P014880.1 Leptosphaeria maculans LEMA_P014880.1 I 0.000
M437DRAFT_54913 Aureobasidium melanogenum M437DRAFT_54913 I 0.000
M438DRAFT_268526 Aureobasidium pullulans M438DRAFT_268526 I 0.000
MAC_04732 Metarhizium acridum MAC_04732 I 0.000
MAJ_00029 Metarhizium majus MAJ_00029 I 0.000
MAM_00669 Metarhizium album MAM_00669 I 0.000
MAPG_11120 Magnaporthe poae MAPG_11120 I 0.000
MBM_06383 Marssonina brunnea MBM_06383 I 0.000
MBR_02609 Metarhizium brunneum MBR_02609 I 0.000
H102_07413 Trichophyton rubrum H102_07413 I 0.000
H101_07442 Trichophyton interdigitale H101_07442 I 0.000
GSTUM_00006957001 Tuber melanosporum GSTUM_00006957001 I 0.000
CTHT_0043170 Chaetomium thermophilum CTHT_0043170 I 0.000
DOTSEDRAFT_67906 Dothistroma septosporum DOTSEDRAFT_67906 I 0.000
EURHEDRAFT_515455 Aspergillus ruber EURHEDRAFT_515455 I 0.000
EV44_g2709 Erysiphe necator EV44_g2709 I 0.000
FGRRES_08392 Fusarium graminearum FGRRES_08392 I 0.000
FOXG_03429 Fusarium oxysporum FOXG_03429 I 0.000
FPSE_09008 Fusarium pseudograminearum FPSE_09008 I 0.000
GLRG_10614 Colletotrichum graminicola GLRG_10614 I 0.000
GMDG_02925 Pseudogymnoascus destructans GMDG_02925 I 0.000
MCYG_00495 Arthroderma otae MCYG_00495 I 0.000
PV08_05826 Exophiala spinifera PV08_05826 N 0.000
PFL1_04625 Pseudozyma flocculosa PFL1_04625 N 0.000
GNLVRS01_PISO0M20670g Millerozyma farinosa GNLVRS01_PISO0M20670g N 0.000
GNLVRS01_PISO0N20913g Millerozyma farinosa GNLVRS01_PISO0N20913g N 0.000