PGSC0003DMG401029709 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG401029709 T322940_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA

TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.918 0.773
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN

NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.918 0.773
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH

DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.918 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400076398 SBP 52 92
PGSC0003DMT400076399 SBP 52 126
PGSC0003DMT400076400 SBP 52 98

Links

Other SBP family TFs
Other Solanum tuberosum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R003080 Calypte anna Aan_R003080 N 0.000
Afo_R005795 Aptenodytes forsteri Afo_R005795 N 0.000
Alligator_sinensis_CCG006384.1 Alligator sinensis Alligator_sinensis_CCG006384.1 N 0.000
Cmyd_10020270 Chelonia mydas Cmyd_10020270 N 0.000
Cmyd_10020276 Chelonia mydas Cmyd_10020276 N 0.000
ENSAMEG00000016663 Ailuropoda melanoleuca ENSAMEG00000016663 N 0.000
ENSAMEG00000016667 Ailuropoda melanoleuca ENSAMEG00000016667 N 0.000
ENSAPLG00000012322 Anas platyrhynchos ENSAPLG00000012322 N 0.000
ENSBTAP00000016933-D1 Bos grunniens ENSBTAP00000016933-D1 N 0.000
ENSCSAG00000003422 Chlorocebus sabaeus ENSCSAG00000003422 N 0.000
ENSFALG00000005516 Ficedula albicollis ENSFALG00000005516 N 0.000
ENSLACG00000009106 Latimeria chalumnae ENSLACG00000009106 N 0.000
ENSMEUG00000014894 Macropus eugenii ENSMEUG00000014894 N 0.000
ENSMPUG00000006921 Mustela putorius furo ENSMPUG00000006921 N 0.000
ENSNLEG00000005560 Nomascus leucogenys ENSNLEG00000005560 N 0.000
ENSOARG00000008579 Ovis aries ENSOARG00000008579 N 0.000
ENSP00000281318 Macaca fascicularis ENSP00000281318 N 0.000
ENSPANG00000010646 Papio anubis ENSPANG00000010646 N 0.000
ENSPPYG00000015104 Pongo abelii ENSPPYG00000015104 N 0.000
ENSPSIG00000004083 Pelodiscus sinensis ENSPSIG00000004083 N 0.000
ENSSHAG00000001116 Sarcophilus harrisii ENSSHAG00000001116 N 0.000
ENSSTOG00000007761 Ictidomys tridecemlineatus ENSSTOG00000007761 N 0.000
Gfo_R000866 Geospiza fortis Gfo_R000866 N 0.000
Myotis_brandtii_ZNF827_10016913 Myotis brandtii Myotis_brandtii_ZNF827_10016913 N 0.000
Tal_R000433 Tyto alba Tal_R000433 N 0.000
Zfp827 Dipodomys ordii ENSDORG00000008073 N 0.000
Zfp827 Mus musculus ENSMUSG00000071064 N 0.000
Zfp827 Rattus norvegicus ENSRNOG00000011697 N 0.000
ZNF827 Sus scrofa ENSSSCG00000009037 N 0.000
ZNF827 Taeniopygia guttata ENSTGUG00000002665 N 0.000
ZNF827 Tursiops truncatus ENSTTRG00000000623 N 0.000
ZNF827 Callithrix jacchus ENSCJAG00000002484 N 0.000
ZNF827 Sorex araneus ENSSARG00000011428 N 0.000
ZNF827 Pteropus vampyrus ENSPVAG00000014300 N 0.000
ZNF827 Canis familiaris ENSCAFG00000007698 N 0.000
ZNF827 Cavia porcellus ENSCPOG00000009087 N 0.000
znf827 Danio rerio ENSDARG00000076171 N 0.000
ZNF827 Echinops telfairi ENSETEG00000007703 N 0.000
ZNF827 Anolis carolinensis ENSACAG00000003618 N 0.000
ZNF827 Felis catus ENSFCAG00000004139 N 0.000
ZNF827 Homo sapiens ENSG00000151612 N 0.000
ZNF827 Gorilla gorilla ENSGGOG00000004696 N 0.000
ZNF827 Loxodonta africana ENSLAFG00000029831 N 0.000
ZNF827 Myotis lucifugus ENSMLUG00000008100 N 0.000
ZNF827 Monodelphis domestica ENSMODG00000000520 N 0.000
ZNF827 Oryctolagus cuniculus ENSOCUG00000002055 N 0.000
ZNF827 Otolemur garnettii ENSOGAG00000005635 N 0.000
ZNF827 Ochotona princeps ENSOPRG00000014059 N 0.000
ZNF827 Pan troglodytes ENSPTRG00000016487 N 0.000
ZNF827 Bos taurus ENSBTAG00000012738 N 0.000