CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG401029709
(
Solanum tuberosum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
PGSC0003DMG401029709
T322940_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA
TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.918
0.773
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.918
0.773
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.918
0.773
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400076398
SBP
52
92
CQVDQCTANMADAKPYHRRHKENMFLVAKCRKSGVVVKFGH
PGSC0003DMT400076399
SBP
52
126
CQVDQCTANMADAKPYHRRHKVCEFHSKSPIVLISGLQQRFCQQCSRFHLLAEFDGAKRSCRRRLAGHNERRRKI
PGSC0003DMT400076400
SBP
52
98
CQVDQCTANMADAKPYHRRHKVCEFHSKSPIVLISGLQQRFCQQCSR
Links
Other
SBP
family TFs
Other
Solanum tuberosum
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy