SPL9 (Arabidopsis lyrata)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 scaffold_403069.1 T323012_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPL9
M01308_2.00
Arabidopsis thaliana
NGTACKDNN

NNHMGTACN
PBM
Lambert et al.(2019)
pTH11560
0.976 0.987
SPL9
M07257_2.00
Arabidopsis thaliana
NNYGTACKKHH

DDMMGTACRNN
Dap-seq
OMalley et al.(2016)
SPL9_col_a
0.976 0.987
SPL9
M07258_2.00
Arabidopsis thaliana
NDNTGTACGGA

TCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL9_colamp_a
0.976 0.987
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403069.1 SBP 73 147

Links

Other SBP family TFs
Other Arabidopsis lyrata TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29269.m000250 Ricinus communis 29269.m000250 I 0.886
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.909
Bo4g015800 Brassica oleracea Bo4g015800 I 0.973
Bo4g191350 Brassica oleracea Bo4g191350 I 0.968
Bo6g108620 Brassica oleracea Bo6g108620 N 0.903
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.975
Bra004363 Brassica rapa Bra004363 N 0.904
Bra004674 Brassica rapa Bra004674 I 0.973
Bra016891 Brassica rapa Bra016891 I 0.968
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.891
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.981
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.891
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.981
Ca_24655 Cicer arietinum Ca_24655 I 0.904
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.894
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.886
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.887
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.891
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.901
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.905
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.905
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.924
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.924
MDP0000297978 Malus domestica MDP0000297978 I 0.909
MDP0000589558 Malus domestica MDP0000589558 I 0.892
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.894
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I 0.889
Pavir.J11258 Panicum virgatum Pavir.J11258 I 0.889
Pm002693 Prunus mume Pm002693 I 0.909
Pm030597 Prunus mume Pm030597 I 0.892
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.909
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.892
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.909
Si030195m.g Setaria italica Si030195m.g I 0.889
SPL9 Arabidopsis thaliana AT2G42200 D 0.976
TCM_024873 Theobroma cacao TCM_024873 I 0.886
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.979
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.891
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.886